Phalacrocorax carbo (great cormorant): 104053072
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Entry
104053072 CDS
T08596
Symbol
IGHMBP2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcao03009
]
104053072 (IGHMBP2)
03012 Translation factors [BR:
pcao03012
]
104053072 (IGHMBP2)
Enzymes [BR:
pcao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104053072 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
104053072 (IGHMBP2)
Ribosome biogenesis [BR:
pcao03009
]
Eukaryotic type
Other ribosome biogenesis factors
104053072 (IGHMBP2)
Translation factors [BR:
pcao03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104053072 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
AAA_19
R3H
Helicase_RecD
zf-AN1
ResIII
Viral_helicase1
DEAD
nSTAND3
AAA_16
AAA_22
SLFN-g3_helicase
UvrD-helicase
Flavi_DEAD
AAA_25
IstB_IS21
AAA
DAP3
T2SSE
ABC_tran
RL
DnaB_C
AAA_18
AAA_33
PhoH
NTPase_1
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
104053072
NCBI-ProteinID:
XP_009512754
LinkDB
All DBs
Position
Unknown
AA seq
939 aa
AA seq
DB search
AWQESISLKELQRRGVCLLKLQAANQRTGLYGRLLVTFQPRKYDLDAELPYNSFGPGKWC
SCQCEVGKVRAGQGDPLSTGIVTRVTSKAVTVAFEESRDGVLSLDRESSYRLLKLANDVT
YNRLKKALNALKQYRSGPASDLINVLFFSSDPSAFGDTKPLKLYNDSLDASQREAVSFSL
AQRELAIVHGPPGTGKTTTLVEIILQAVQQGLKVLCCAPSNVAVDNLVERLAGYKAHILR
LGHPARLLETIQQHSLDAVLARSDNAQIVADIRKDIDQAFAKTKKAQDKGERSHFLSEIK
ALRKELKEREETAMATALTHASVVLATNTGASSDGPLKLLPEDHFDLVVIDECAQALEAS
CWIPLLKARKCILAGDHKQLPPTIISHKAAAKGLSLSLMERLIERYGEKIVKMLTVQYRM
HQAVMQWASWEMYGGRLTAHPSVAQHLLKDLPGVTCTEETAIPLLLIDTAGCGLFELEVE
DEQSKGNPGEVQLAGLHIQALVEAGVKAQDIAVVAPYNLQVDMLREHLCHRYPELEIKSV
DGFQGREKEAVILSFVRSNRKGEVGFLAETVAVPRARRHVAVICDTRTISNQAFLKRLVD
YFSQHGEVRTAFEYLDNLVPENYAQEGRGERQQGTKLPAASGPKPQLPLXGRKLKAAATK
PGCQKPEARSSPNTSRPVRESLDFPPSLNSHDRMLVHLMAEEHGLQHVSTGDGRDRYISV
RKKEPAKPSPPAAAPPSKQLPLPQPQHPSREAAVPAEPGRSSNGSEKVDLKTLHLERVQR
EKARREEAARKAQEPSAGLQGSSRKKDKSEAKGKPAVKGGADSTVEEDIDALISAAIKAD
NTCSFPHCKASVTTLGQLCLHCNRRYCLSHHIPEVHGCGEKAKAHARQRISREGVLYPGS
GSKDKSLDPAKRAHLQRRLDKKLSELTSQRKSKKKDKEK
NT seq
2821 nt
NT seq
+upstream
nt +downstream
nt
ggcatggcaggaaagcatctccctgaaggagctgcagcgcagaggtgtctgcttgctaaa
actccaagctgccaaccagagaaccggcctctacgggcggctgctcgtgacgtttcagcc
tagaaaatatgatttagacgctgagctgccctataacagtttcgggcctggtaagtggtg
ttcctgccagtgtgaagtaggtaaagtgagagctggccagggtgatccgctctccacagg
cattgtaacccgtgtcacctccaaagcagtgactgtcgcctttgaggaatctcgagatgg
cgtgctgagcttggaccgggagagctcttaccgcctcctgaaattagccaacgacgtcac
ctacaacaggctgaaaaaagctttaaatgcactgaagcagtaccgcagtggtccagcctc
tgatctgatcaacgtcctcttcttttcctctgatccaagcgcattcggtgacacaaagcc
tctaaagctttacaatgactctctggatgcatcgcagagggaggccgtctccttctctct
ggcgcagagggagcttgccatcgtccatggaccacctggcacaggaaagaccacaacact
agtagagatcatcttgcaagctgtacagcaaggcctgaaagtcctgtgctgtgccccttc
caacgttgctgtggataatctggtggaacggctggctggctacaaagcccacatcctgcg
gcttgggcaccctgctcgcctgctggagaccatccaacagcattccttggacgcggtctt
ggcccgcagcgacaacgcccagatagtggcagatatcaggaaggacatcgaccaggcctt
tgcaaaaaccaaaaaggctcaagacaagggagagcggagccattttctcagtgagattaa
ggcactgagaaaggagctaaaggaacgagaagaaactgccatggctacagcccttacgca
tgccagtgttgtccttgctacgaacacaggtgcttcctctgacggcccactgaagctgct
tcctgaagatcactttgatctcgtggtgatagatgagtgtgcccaggccctggaagccag
ctgctggatacctctgctgaaggctcggaagtgcatcctggccggggatcacaaacagct
tccccccaccatcatctctcacaaggctgctgccaagggcctttcgctcagcttgatgga
gcgcctcatcgagaggtacggggagaagattgtgaagatgctgacggtgcagtaccgaat
gcaccaggccgtcatgcagtgggcttcctgggagatgtacggcggccggctcactgctca
cccatcagtagcccagcatttgctcaaggacctgccgggcgtcacctgtacagaagagac
cgcgattcccttactgcttatagacactgctggctgtggcctgtttgagctggaagtgga
agatgagcagtctaaggggaatccaggggaggtgcagctggcgggtttgcacatccaggc
cttggtggaagctggtgtgaaggcacaagacatcgccgttgtagccccctacaacctcca
ggtggacatgctaagagagcacctttgccacaggtacccagagctagaaattaagtcagt
tgatggtttccaaggaagagagaaagaggcagtgatcctgtcgttcgtgagatccaacag
gaaaggtgaggtgggctttcttgcggaaaccgtagcggtgccccgcgcccggcgccacgt
ggctgtcatctgcgacacccgcaccatcagcaaccaagcctttctgaagcggctggtgga
ttatttcagccagcatggggaggtacgaacagccttcgagtacctcgacaacctcgtgcc
cgaaaactacgctcaggagggccgcggtgagcggcagcagggcacaaagctccccgcagc
atctggccccaaaccgcagctgcctctgnnggggaggaagctcaaagcagcagcaaccaa
accaggctgccagaagccagaagcacgctcctccccgaacacaagcaggcctgtgagaga
gagcttggatttccccccctccctcaattctcacgatcggatgctggttcacctaatggc
agaggaacacgggctgcagcacgtgagcaccggggacgggagggaccggtacatcagcgt
tcgcaagaaagagcctgccaagccttcgccgcccgcggccgctccccccagcaagcagct
tccccttcctcagccacaacatcccagcagggaggctgctgtccctgctgagccaggcag
aagcagcaacggctcagagaaagtggacctgaaaaccctgcacctggagagagttcagag
ggagaaagccagacgggaggaggcagcgaggaaggctcaggagcccagtgctggccttca
gggcagcagcaggaaaaaagacaaaagtgaagcgaaaggaaagccagcagttaaaggcgg
agcagacagcacggtagaagaagatatcgacgctctgatttctgctgccattaaagctga
caacacctgcagcttcccccactgcaaagccagcgttacaaccctgggacagctttgcct
ccactgcaacaggcgctactgcctcagccatcatatcccggaggttcacggctgtgggga
gaaggccaaggcccacgcgcggcagaggatcagcagagaaggggttctctaccccgggag
cggctccaaagacaagtccctggacccagccaagagagcccatctccagcggcgccttga
caagaagctcagcgaactgaccagccagagaaagagcaaaaagaaagacaaggagaaatg
a
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