Phalacrocorax carbo (great cormorant): 104053117
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Entry
104053117 CDS
T08596
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104053117 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcao03041
]
104053117 (PRPF8)
Spliceosome [BR:
pcao03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104053117 (PRPF8)
Complex C
U5 SnRNP specific factors
104053117 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
U5_2-snRNA_bdg
PRO8NT
RRM_4
PROCT
JAB
Motif
Other DBs
NCBI-GeneID:
104053117
NCBI-ProteinID:
XP_009512803
LinkDB
All DBs
Position
Unknown
AA seq
2194 aa
AA seq
DB search
ALKYMPHAVLKLLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYIAQWGSMWIM
MRREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEAIQLELDPEEDAPVLDWFYDH
QPLKDNKKYVNGSTYQRWQFTLPMMSTLYRLANQLLTDLVDDNYFYLFDLKAFFTSKALN
MAIPGGPKFEPLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLT
WYHTPNVVFIKTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKD
TPLYTDNTANGIALLWAPRPFNLRSGRTRRALDIPLVKNWYREHCPAGQPVKVRVSYQKL
LKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHR
KNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVD
AFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFW
APGWRVWLFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVM
HDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWW
TNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAVY
TTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQA
YDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEA
DKRRLFPPWIKPADTEPPPLLVYKWCQGINNLQDVWETSEGECNVMLESRFEKMYEKIDL
TLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDL
LVLGLHRASEMAGPPQMPNDFLSFQDIATEVAHPIRLFCRYIDRIHIFFRFTADEARDLI
QRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQW
ENSFVSVYSKDNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFL
RVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVK
CENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGI
THFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLED
SWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNY
RTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIP
NRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIV
MDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKD
VMDSTTTQKYWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYN
LHSAYGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGE
LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
KRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQ
LPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRA
KVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDI
ILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSK
TEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYG
VSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSP
QDVTTHAKVMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGXXXKG
YLPSHYERVQMLLSDRFLGFFMVPAQGSWNYNFM
NT seq
6584 nt
NT seq
+upstream
nt +downstream
nt
tgctctgaagtacatgcctcatgctgttttgaagctcttggagaacatgcccatgccctg
ggagcaaatcagagatgtcccggtcttgtaccatatcacaggcgccatctcttttgtgaa
tgagattccctgggtcatagagccggtgtatattgctcagtgggggtcaatgtggattat
gatgaggcgagagaagagggataggcgtcacttcaagaggatgagattccctccgtttga
tgatgaagaacctcctctggattatgctgataacatcctggatgtggagcccctggaagc
gattcagcttgaactggatccagaggaggatgcccctgtgctggactggttctatgacca
ccagccgctgaaagacaacaagaagtatgtaaatggttcgacgtaccagcgttggcagtt
cacgctcccgatgatgtccacgctgtaccggctggccaatcagctgctcactgaccttgt
ggatgacaactatttctatttgtttgacctgaaagcattctttacctccaaagcactgaa
catggctattcctggaggtcccaagttcgagcctcttgttagagacatcaatcttcagga
tgaagactggaatgaatttaacgacatcaacaaaattattatcaggcagccgatcaggac
agagtacaaaattgctttcccatacctgtacaataacctgccacaccatgtgcacctgac
ctggtatcatactccaaacgtcgttttcatcaaaacagaagatcctgatctcccagcttt
ttactttgatccactgatcaaccccatttcacacagacactccgtcaagagtcaggagcc
gttgcctgatgatgatgaagagtttgagttgccagagtttgtggaacctttcctgaagga
taccccgctctacacagataacacagccaacggcattgccctgctgtgggccccacggcc
cttcaacttgaggtctgggaggactcggagagctcttgatatcccactggtcaagaactg
gtatcgtgagcactgcccggcaggccagccagtgaaagtgcgagtctcctatcagaagct
actgaaatactatgttctgaacgcactcaagcacagacctcccaaggcccagaagaagag
gtacctattccgctccttcaaggctacaaagtttttccagtcgacaaagctggactgggt
ggaagtgggcctgcaggtctgtcgccagggctacaatatgctgaacttgctgatccacag
aaagaacctgaactaccttcacttggattacaacttcaacctgaagcccgtgaagaccct
caccactaaggaaaggaaaaaatctcgtttcggtaatgctttccatctgtgccgagaggt
tctgcggctgactaagttagtggtggacagccacgtccaatacaggcttggaaatgtgga
tgcgtttcagttggcagacggcttgcagtacatctttgcccatgtgggtcagctgacagg
aatgtaccgatacaagtacaaactgatgaggcagattcgtatgtgcaaggacctgaaaca
tctcatctactacaggtttaacacggggcctgtgggcaaaggtcctggctgtggcttctg
ggctccaggctggagagtgtggctgttcttcatgaggggcatcacgccactgctggaacg
ctggctggggaatctgctggctaggcagtttgaaggccgtcactcaaagggtgtggcaaa
gactgtcacgaagcagcgtgtggagtctcactttgacctggagctgagggcagccgttat
gcatgacattctggacatgatgccagaaggaatcaaacagaacaaagccagaaccatcct
gcagcatctgagcgaggcctggcggtgctggaaggccaatatcccctggaaggtgccggg
gctgccaactcctattgaaaacatgatcctgaggtacgtgaaggcaaaagctgactggtg
gacaaatacagctcactacaacagggagcggatccgtcggggtgccactgtagacaaaac
tgtctgtaagaagaatctgggccggctgaccagactctacttaaaagctgagcaggaacg
gcagcataactacttgaaggatgggccttacatcactgcggaagaggctgttgctgtgta
cacaaccacagtgcactggctggaaagcaggaggttctcacccattcccttccccccgct
gtcctacaagcatgacaccaagttgctcatattagccctggagaggctgaaggaagctta
cagtgtgaaatctcgcctgaatcagtcgcagagagaagagttgggcttgattgagcaggc
ttatgataatcctcacgaagctctgtccagaatcaaacgacaccttttaactcagagagc
cttcaaggaggtgggtattgagttcatggatctctacagccacttagttcctgtttatga
tgttgagcccttggagaaaatcacagatgcttacctggatcagtacttgtggtatgaggc
cgataagcggcgactcttccctccatggatcaaacctgctgacactgaacctcctccact
gttggtgtataagtggtgccaaggcattaataatctgcaagatgtttgggaaacgagtga
aggcgaatgcaacgtgatgctggaatctcgttttgagaagatgtacgagaagattgactt
gacgttgctcaacaggctgttgcgtcttattgttgatcacaacattgctgactatatgac
agccaagaacaacgtggtgatcaactacaaggacatgaatcacacaaactcctatgggat
tattcgtgggctgcagtttgcttccttcattgtgcagtattatgggcttgtgatggactt
gctggtgctgggtctgcaccgtgccagcgaaatggctgggcctccccagatgccaaacga
cttcctcagcttccaagacattgccacggaggtggcccatcccatccgcctcttctgcag
atacatcgaccgtattcacatcttcttcaggttcacagcagatgaggcaagagacctgat
tcagcggtacctgacagagcatccggatcccaacaacgagaacatcgtaggctacaacaa
caagaagtgctggccccgggatgctcggatgcgcctcatgaaacacgatgtgaaccttgg
tcgtgctgtattctgggatatcaagaaccgcttgcctcgatcagtcaccacagtgcagtg
ggagaatagcttcgtgtctgtttacagcaaggataaccccaatttgctgtttaacatgtg
tggttttgagtgccgcattttgcccaagtgccgcaccagctatgaggagttcacccacaa
ggacggtgtctggaacttgcagaacgaggtcaccaaggagcgcacagcacagtgctttct
gcgtgtggatgatgaatctatgcagaggtttcacaacagagtaaggcagatcctcatggc
atctggctccacaaccttcactaagattgtcaataaatggaatacagctctgattggctt
gatgacttatttccgggaagctgttgtaaacactcaggagttgcttgatttgctggtcaa
gtgtgaaaataaaatccagactcgaatcaaaattggtctgaattccaaaatgcccagccg
ttttccaccagtggtgttttacacccctaaagagctgggagggctgggcatgctctccat
gggccacgttctcatcccgcagtctgacctgaggtggtccaagcagacagatgttggcat
cactcacttccgctcaggaatgagccatgaggaggaccagctcatcccgaatttgtatcg
ttacatccagccatgggaaagtgaattcattgactctcagagagtctgggcagagtatgc
ccttaagcgacaagaggctatagcccagaacaggcgtctgacactagaggatctggagga
ctcgtgggacaggggaattcctcgtattaacacccttttccagaaggaccggcatactct
agcttatgataaaggatggcgagtcaggactgacttcaagcagtatcaggtcctgaaaca
gaacccgttctggtggacgcatcagcgccatgatggcaagctctggaacctgaacaacta
ccgcacagatatgatccaggcactcggtggagtggaaggaatcctggagcacaccctctt
caagggcacttacttccccacatgggagggtctcttctgggagaaggccagtggctttga
ggagtccatgaagtggaagaagctgacgaatgcccagagatcgggtttgaaccaaattcc
aaacagaagattcaccctctggtggtctcctaccattaacagagccaatgtatatgttgg
gtttcaagtgcagctggatttgacaggcatctttatgcacggcaagatccccacgctgaa
gatctctctcattcagattttccgagctcacttgtggcagaagatccacgagagcattgt
aatggatctgtgccaggtgtttgatcaagagctggatgctctggagattgagacagtgca
gaaagagaccatccatcccaggaagtcatacaagatgaactcctcatgtgcagatatcct
tctctttgcttcctataagtggaacgtgtcacgtccatcattgctcgcagattccaaaga
tgtgatggatagcaccaccactcagaagtactggatagatatccagctgcgctggggaga
ttacgattcccatgatatcgagcgctatgcaagagccaagttcctggactacactacaga
caacatgagtatctatccatctcctactggtgtgctcattgccattgatctggcctataa
cttgcacagtgcttatgggaactggttccctgggagcaaacctctcatccagcaggctat
ggccaaaattatgaaagcaaatcctgcgctgtacgtgttgagagaacgcatccgcaaggg
gttgcagctgtactcctctgagcccacagaaccatacctttcctcccagaactacggaga
gctcttctccaaccagatcatctggtttgtggacgacaccaacgtgtacagagtgaccat
tcacaagactttcgaagggaatttgaccacaaaacccatcaatggagccattttcatctt
caatcccagaacaggacagctattcctgaagatcatccatacgtctgtgtgggcaggaca
gaagcgtctaggacagctggccaagtggaagactgctgaagaagtggctgccttgattcg
atcgcttcctgtggaggagcagcctaagcagatcatagtgacgcggaagggcatgttgga
cccacttgaggtgcacttgctggatttccccaatattgtgatcaaaggctcagagttgca
gctgcccttccaggcctgtctgaaagtggaaaagtttggtgatctcatcctgaaggctac
cgaaccccagatggttctcttcaacctttatgatgactggctgaaaaccatctcttccta
cacggcattctctcgtctgattctgattctccgggcgctacatgtgaataacgatcgagc
caaagttattctgaaaccggataagacaaccataacggagcctcaccacatctggcccac
cctgacagatgaggagtggatcaaggtggaggtgcagctgaaggatctcatccttgctga
ctatggcaagaagaacaatgtgaacgttgcgtccctgacgcagtcggagatccgagacat
tatcctgggcatggagatctctgccccctctcagcagagacagcagatcgcagaaattga
gaagcaaaccaaggagcagtcacaactgacagccacgcagacccgcactgtgaacaaaca
cggggatgagatcatcacctctacaacaagcaactacgaaacccagaccttctcctccaa
gactgagtggcgagtcagagcaatttctgctgccaacctccacctgcgaacaaaccacat
ttacgtctcgtcagacgatataaaggaaacgggctatacctacattcttcccaagaacgt
gttgaagaaattcatctgcatctcagatctgcgagcccagattgcgggttacctgtatgg
agtgagccctcccgataacccccaagtgaaggagatccggtgcatcgtgatggtgccgca
gtggggaacacaccagaccgtgcatctcccggggcagctgccgcagcatgagtatctcaa
ggaaatggaacctctggggtggattcacacccaaccaaacgagtcccctcagctctcgcc
gcaggacgtcaccactcatgccaaggtcatggctgacaacccctcctgggatggggagaa
gactatcatcatcacctgcagtttcacgccgggctcctgcacgctgacagcctacaagct
gaccccgagcggctacgagtggggcaggcagaacacggacaaaggnnnnnnnnccaaggg
ctacctgccatcccactacgagagggtgcagatgctgctctcggatcgcttcctcggctt
cttcatggtcccggcgcaagggtcctggaactacaacttcatgg
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integrated database retrieval system
