Phalacrocorax carbo (great cormorant): 104053303
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Entry
104053303 CDS
T08596
Name
(RefSeq) serine/threonine-protein kinase SMG1-like
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104053303
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pcao01001
]
104053303
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104053303
Enzymes [BR:
pcao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104053303
Protein kinases [BR:
pcao01001
]
Serine/threonine kinases: Other
PIKK family [OT]
104053303
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104053303
mRNA cycle factors
Common to processing body (P body) and stress granule
104053303
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMG1
SMG1_N
HEAT_ATR
HEAT
FAT
Motif
Other DBs
NCBI-GeneID:
104053303
NCBI-ProteinID:
XP_009513024
LinkDB
All DBs
Position
Unknown
AA seq
1845 aa
AA seq
DB search
TDSASADQDNLKYSSSRDRGSSASYGLQPSNSAVVSRQRHDDIRLHTDIQNEEKGGYSVN
GGSGENTYGRKSLGQELRVNNVTNPDFTSVPHGNRALATKDMRKSQERSLSYSDESRLSN
LLRRITREDDRDRRLATVKQLKEFIQQPENKLVLVKQLDNILTAIHDVLNESSKLLQELR
QEGACCLGLLCASLSYEAEKIFKWIFSKFSSSTKDEVKLLYLCATYKALETVGEKKAFSS
LMQLVMTSLQSILENVDTPELLCKCVKCILLVSRCYPHIFSTNFRDTVDILVGWHIDHTQ
KPSLTQQVSGWLQSLEPFWVADLTFSTTLLGQFLEDMEAYAEDLSHVASGESVDEDIPPP
SVSLPKLAALLRVFSTVVRSIGERFSPIRGPPITEAYVTDVLYRVMRCVTAANQVFFSEA
VLTAANECVGVLLGSLDPSMTVHCDMVITYGLDQMENCQTCGTDYIISVLNLLTLIVEQI
NTKLPSSFVEKLFIPESKLLVLRYHKEKEVVAAAHAVYQAVLSLKNIPVLETAYRLILGE
MTCALNSLLYSLHLPEACSEIQHDSFKKHILNVDNAKFVVIFDLSALSTIGNAKNSLIGM
WALSPTVFALLSKNLMIVHGDIAVHFPAVQYAVLYTLYSHCSRHDHFISSSLSSSSPSLF
DGAVISTVTTATKKHFSIILNLLGLLLKKDNLTQDTRKLLMTWALEVAVLMKKSETYAPL
FSLPSFHKFCKGLLANTLLEDVNICLQACSSLHALSSSLPDDLLQRCVDVCRVQLVHSGA
RVRQTFGKLLKSIPLDVVLSNRTHTEIQEISLAIRSHMSKAPSNTFHPQDFSDVISFILY
GNSHRTGKDNWLERLFYSCQRLDKRDQPTIPRNLLKTDAVLWQWAVWEAAQFTVLSKLRT
PLGRAQDTFQTIEGIIRSLAAHTLNPDQDVSQWTTADNDEGHSSNQLRLVLLLQYLENLE
KLMYNAYEGCANALTSPPKVIRTFFYTNRQTCQDWLTRIRLSIMRVGLLAGQPAVTVRHG
FDLLTEMKTNTSISQGNELEVTIMMLVEALCELHCPEAIQGIAVWSSAVVGKSLAWINSV
AQQAEGRFEKATAEYQEHLCSMTGVDCCITGFDKTVLKLANSNSVNNASPKHSLNGETRK
TVLTKPSDSSPEVINYLGNKACECYISIADWSAVQEWQNMVHDLKKSNSNTSINLKADFN
YIKSLSSFESGQLTECTEQLELLPGENINLLAGGSKEKIDMKKLLPNMLSPDPRELQKAV
EVQLLRSSVCLATAVNHIEQEQKWQSISENVIKYLKQTSRIAIGPLRLSTLTVSQSLPVL
STLQLYCSSALENTVSNRLTSEDCLIPLFNDALRSCKQHDVRPWMHALRYTVYQNQLMEK
LKEPTVPIKSHLMELGLTAAKFARKRGNIALATRLLAQCSEVQLGKTTTAQDLVQHFKKL
SVPGQIDEKWGPELDIEKTKLLYTAGQSTHAMEMLSSCAISFCKSAKAEYAVAKSILTLA
KWIQAEWKEISGQLKQVYRARQQQNHTGLSTLSKNIYNLIDLPAVNTLEEEYPRIESEST
VNIGVGEPDFILGQLYHLSSVQAPEVAKSWAALASWAYRWGRKVVDNASQGEGVRLLPRE
KSEVQNLLPDNIAEEDKEKIYGILGQAVCRPAGIQDEDMTLQITENEDNEEDDMVDVIWR
QLLTSCPWLSELDENATEGLIKVWRKVVDRIFSLYKLSCSAYFTFLKLNAGQVLLDEDDP
RLHLRNTSEQSTDDVIVMATLRLLRLLVKHAGELRQYLEHGLETTPTAPWRGIIPQLFSR
LNHPEVYVRQSICNLLCRVAQDSPHLILYPAIVGTISLSSESQTS
NT seq
5537 nt
NT seq
+upstream
nt +downstream
nt
aactgacagtgcatcagctgaccaggacaatttaaaatactcctcatccagagatcgggg
cagttctgcctcctatggattacaaccctcaaattcagctgtggtgtctcgacaaagaca
tgatgatatcagactccacactgacatacagaatgaagaaaaaggtggctacagtgtcaa
tggaggatctggggaaaatacttatggtcggaagtcgttggggcaagagctgagagttaa
caatgtgaccaatcctgattttaccagtgttccgcatgggaatcgtgctttagccacaaa
agacatgaggaaatcacaggagcgatcgttgtcttattctgacgagtctcgactgtcaaa
tcttcttcggaggattactcgggaagacgacagagaccgaagactggctactgtaaagca
attgaaagaattcattcagcaaccagaaaacaaactggtactagttaaacaactggataa
tatcctgactgccattcatgatgtactcaatgaaagtagcaaattgcttcaagaactgag
acaggaaggagcttgctgtcttggccttctttgtgcttctctgagctatgaggccgagaa
aatctttaaatggatttttagcaaattcagctcatccacaaaagatgaagttaaacttct
ttatttgtgtgcaacctacaaagcactagagactgtaggagaaaagaaagccttttcatc
tttaatgcagcttgtaatgaccagcctgcagtccattctagaaaatgtggatacaccaga
gttactgtgcaaatgtgtcaagtgcatccttctggtgtcccgatgctacccacacatttt
cagcaccaattttagggacacagtggacatactggttgggtggcatatagaccacactca
gaaaccttcgttgactcaacaggtgtctggatggctgcagagtttggagcccttttgggt
ggctgatcttactttttctaccacacttttgggtcagtttttagaagatatggaagcgta
tgctgaggacctcagccatgtggcttctggggaatcagtagatgaagatattcctcctcc
ttcagtatcactgcctaaactggctgcacttcttcgggttttcagtactgtggtgaggag
tattggggaacgcttcagcccaattagaggaccaccaattacagaagcatatgtaactga
tgttctgtacagagtaatgagatgtgtgactgcagcaaatcaagtgttcttttctgaagc
cgtacttacagctgccaatgagtgtgttggtgttttacttggcagcctggatccaagtat
gaccgtacactgtgacatggtcatcacatatggattagatcaaatggaaaattgtcagac
ctgtggcactgattatatcatttcagtcctgaatctgttgacactgattgttgaacaaat
aaatacaaaactaccatcgtcatttgtagagaaattatttataccagagtctaaactact
tgttcttcgttatcataaggagaaagaggttgttgcagcagcccatgctgtataccaagc
ggtattgagcctgaagaacattcctgttttggagactgcttacaggttgattctaggaga
aatgacctgtgctctaaacagtcttctctatagtttacatcttcctgaggcctgttctga
aatccagcatgattcattcaagaagcatatactcaatgtggataatgcaaagtttgttgt
tatatttgacctcagtgctctaagtactattggaaatgctaaaaactcattaattgggat
gtgggccctttcgccgactgtgtttgcactactgagtaaaaatctgatgattgttcacgg
tgacatagcagttcattttcctgctgtccagtatgcagtactctatacattatattcaca
ctgttccaggcatgaccatttcatatccagtagcctcagttcttcctccccttctctgtt
tgatggagcagttataagtactgttaccacagcaacaaaaaaacacttctcaatcatact
aaaccttttggggctactgcttaagaaggataaccttactcaagataccaggaaactact
tatgacatgggctttggaagtggctgttctgatgaaaaaatcagaaacatatgcaccgtt
attttctctcccatcttttcataagttttgtaaaggacttttagcaaacacccttctaga
agatgtgaacatttgtcttcaagcatgtagtagccttcatgccctatcttcctccctccc
agatgacctcttacaaaggtgtgttgatgtgtgtcgtgttcaactggtacatagtggtgc
acgtgtaagacaaacttttggaaaacttctgaaatcaattcctttagatgtcgtgttgag
taaccgtacccacacagaaatacaagaaatttctttggctataagaagtcatatgagcaa
agctccaagtaatacattccacccgcaggatttctctgatgtcattagttttattttgta
cgggaactctcaccgaactgggaaggataattggttagaaagattattctatagctgtca
aagactagataagcgagatcagccaaccatccctcgtaatctgttgaagactgatgctgt
tctttggcaatgggctgtttgggaagcagctcagtttactgttctttcgaagttacgaac
tcctctgggtagagcccaagacacttttcaaacaattgaaggtattattaggagtcttgc
agcccatacattaaatcctgaccaagatgttagccagtggactactgcagacaatgatga
aggacacagtagcaaccagcttaggcttgttctccttctacagtatctggagaacttgga
aaaattgatgtacaatgcttatgaaggatgtgccaatgcccttacctctccacccaaggt
tatcaggacgttcttttatactaaccgtcaaacgtgccaagattggctaacgcggattag
gctttccatcatgagagttggattgctggctggccagcctgctgtgacagtcaggcatgg
ttttgatttacttacagaaatgaaaactaatactagtatctctcagggaaatgaattgga
agtgacaattatgatgctggtagaggcactgtgtgagcttcactgtcctgaagctattca
gggtatcgctgtctggtcttctgctgtagttgggaagagtcttgcctggatcaattctgt
agctcaacaagcagaaggacggtttgaaaaagcaactgcggaataccaggagcacctgtg
ctccatgacaggagtggattgctgcataacaggctttgacaaaactgttctgaagttggc
caattcaaacagtgtgaataatgcaagcccaaagcattccttgaatggagaaactagaaa
aactgttctgactaagccaagtgactcttcacctgaagttataaactacttgggtaacaa
agcatgtgaatgttatatttccattgctgactggtctgctgttcaagagtggcaaaatat
ggtccatgacttgaagaaaagcaatagcaatacctcaatcaatctgaaagcagattttaa
ctacataaaatctttgagcagctttgagtctggacaacttactgaatgcactgaacaact
agaattattaccaggagaaaatatcaacctacttgcagggggatccaaagaaaaaataga
catgaagaagctccttcctaatatgctaagtcctgatccaagagaacttcaaaaagcagt
tgaagtacagcttttgagaagttcagtatgtctggcaacagctgtaaaccacatagaaca
ggaacaaaagtggcagtcaatatctgaaaatgttattaagtacttaaagcaaacatcacg
aatcgctattggacctttaagactttccacactcactgtgtctcagtctttaccagtgtt
gagcactcttcagttgtattgttcttctgctttggaaaacactgtatccaacaggcttac
atcagaggactgtcttatacctctcttcaatgatgctttgaggtcatgtaaacagcatga
tgtaaggccatggatgcatgcactgaggtacacagtgtaccagaatcaattgatggaaaa
acttaaagaaccaacagtcccaattaaaagccatctaatggagctgggcttaacagcagc
aaaatttgcacggaagcgaggaaatattgctctagctacacgactgcttgcccagtgcag
cgaagttcagctaggaaaaaccaccactgcacaagacttagtccagcactttaaaaaatt
gtctgtaccaggtcagatagatgaaaaatggggtcctgaacttgatattgagaaaacaaa
gttgttatacacagcaggtcaatcaacacatgccatggaaatgctgagttcttgtgccat
atccttttgcaaatctgccaaagctgaatatgcagtcgctaaatctattctcacgctggc
gaaatggattcaagcagaatggaaagagatttcaggacagttgaaacaagtatatagagc
tcgacagcagcagaatcacactggtctgtctaccttgtctaaaaacatatataatttgat
tgatctcccagctgttaatacactagaagaagaatatcctaggattgaaagtgaatctac
agtaaatattggagttggagaacctgacttcatcttgggacagctgtatcatttgtcttc
agtacaggcacctgaagtagcaaagtcttgggcagccctggctagttgggcttatagatg
gggccggaaagtagttgataatgccagtcagggagaaggtgttcgtctgctgccccggga
aaaatctgaggttcagaacttgcttccagacaacattgcagaggaagataaagagaaaat
ctatgggattcttggacaggcagtgtgtcgtccagctgggattcaagatgaagatatgac
tctacaaatcaccgaaaatgaagacaatgaagaagatgatatggtggatgttatatggcg
tcaattactaacaagttgtccctggctttcagaacttgatgaaaatgcaacagaaggatt
aattaaagtgtggaggaaagttgtagacagaatcttcagtctctataaactctcctgcag
tgcatactttacttttctcaaactcaatgctggtcaggttctgcttgatgaagatgatcc
caggctgcacttaagaaatacttctgagcagagcactgatgatgttattgtgatggcaac
cctaagactgttacgattgcttgtgaaacatgctggagaacttagacagtatctagaaca
cggtttagaaactacacctactgctccttggagaggtattatacctcagcttttctcccg
ccttaatcacccagaagtgtatgttcgtcagagtatttgcaacttactgtgtcgagtggc
tcaagattctcctcatctcatactatatcctgcaatagtgggtaccatttcacttagcag
tgaatcccagacttcag
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integrated database retrieval system
