Pseudoalteromonas carrageenovora: PC2016_0818
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Entry
PC2016_0818 CDS
T06565
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcar
Pseudoalteromonas carrageenovora
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcar03032
]
PC2016_0818
03400 DNA repair and recombination proteins [BR:
pcar03400
]
PC2016_0818
Enzymes [BR:
pcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PC2016_0818
DNA replication proteins [BR:
pcar03032
]
Prokaryotic type
DNA Topoisomerases
PC2016_0818
DNA repair and recombination proteins [BR:
pcar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PC2016_0818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QBJ71055
LinkDB
All DBs
Position
I:912045..913022
Genome browser
AA seq
325 aa
AA seq
DB search
MKLIYVDDNLPGITRKLKHKSWLYFDPIGKQIKEQNVIDRLNGLAFPPAYKNAWFCPEEN
GHILATGFDSKGRKQYRYHPEFRAQQEAKKYQACGVFGNKLPLLRARLETDLQGDELNIE
RTLAAVVRLMDLGALRVGNERNVKQNKSFGATTLRTRHAKLTGKNIQLKYRAKSGKEREV
NITDRVLSHVIKDLQDLPGQHLFQYIYEGERTNVTSSEINQYIQQIMGEDFSAKHFRTWR
ASVIAFKQLAKAKGALTLKSMLDSVCEQLGNTPAIARKSYVHPDLITLCKEDEDTQTAWR
ESLALPRKTKYLSRYERGFLAFLND
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgaagctaatttatgtagatgataatttgccagggatcacgcgtaaacttaaacacaaa
agttggctttacttcgatccaataggtaagcaaataaaagagcaaaatgtgattgatcgt
ttaaatggattggcatttccgcctgcctataaaaacgcttggttttgcccagaagaaaac
ggacatattttagcgacagggtttgatagtaaagggcgaaaacaataccgctatcatcct
gaatttagagcgcaacaagaggctaaaaaataccaagcatgtggagtgtttggtaataaa
cttcctttgttaagagcacgtttagaaacagacttacaaggcgatgagcttaatattgaa
cgtactttagcggcagttgtaaggcttatggatttaggtgcgctgagggtaggtaatgag
cgtaacgtaaagcaaaataaaagctttggcgctacaacattacgcacacgccatgcaaaa
ctcacgggtaaaaatatccagctaaagtatcgggctaaatcaggcaaggagcgtgaagta
aatataaccgatagagtgcttagccatgtaataaaggacctacaagatttacccggccag
catttgtttcagtatatatatgagggtgagcgcactaatgttacatcaagtgaaataaat
caatatattcagcaaataatgggtgaagattttagtgcaaaacattttagaacttggcga
gcaagcgtgattgcatttaaacaattagctaaagccaaaggagcgcttactttaaaaagt
atgcttgatagtgtctgcgagcaactgggtaatactcccgctatagcacgtaaatcatat
gtgcatcctgatttaattacgctgtgcaaagaagatgaagatactcaaactgcgtggaga
gagtctcttgcattaccacgaaaaacgaagtacttgagtcgttatgaacgtggtttttta
gcttttttaaacgattaa
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