Pseudoalteromonas carrageenovora: PC2016_2003
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Entry
PC2016_2003 CDS
T06565
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC2016_2003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcar03019
]
PC2016_2003
Enzymes [BR:
pcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PC2016_2003
Messenger RNA biogenesis [BR:
pcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PC2016_2003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
QBJ72203
LinkDB
All DBs
Position
I:complement(2296109..2297503)
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AA seq
464 aa
AA seq
DB search
MSFDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI
ERLSSGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL
RKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQ
NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKPRKTALLSHLIRS
NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT
DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYGIER
FIGELIPRAEEEGFEPVNPVAERALDARPLPAKKPKKKQPFNKPKSDSSKPNSKKPNNGG
NGTGPRRGGSKKPAAKTDDNAQNPWAKRQSVGGNGQRRRRTNND
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgatggtttaggtttatcacagtctttagttaatgcggttttagaaaagggc
tatgaaacgccaacgcctattcaggctcaagcaattcctgcaattattgaacgtcgcgat
gttatggcggctgcgcaaacaggtactggtaaaaccgcaggttttacgttaccgctaatt
gagcgtttatcgtcgggccctaaagctaaaagcaatcacgtacgtgcacttatattagcg
ccaactcgtgagcttgcattgcaagttagcgaaaacgtagaagagtacgctaagcactct
gacgtaagttcgtttgtagtgtatggcggtgttaaaattaacccgcaaatgcagcgcctt
cgtaaaggggttgatattttagtagccacgccgggtcgattaattgatttacataatcaa
aatgcagttaagtttgatagtgttgaagtactcgtgcttgatgaagctgaccgcatgctt
gatatgggctttattcacgatattaaacgccttattgctaaaatgcctgctaaacgccaa
aatcttatgttctcagcaacattttcagacgatattcgtgcattagcaaaaggcctaata
aacgatcctgttgaaatttcagttgcagcaaaaaacaccacggctaaaagtgtaacgcaa
agtgtttatgcagtagacaaaccacgtaaaacagcattattaagccacttaattcgtagc
aacgattggcagcaagttttagtatttagccgcactaaacacggtgctaaccgcttggtt
aaacaacttgagcgcgacgatatagtaggcgcagctattcatggtaataaatcacaaggc
gcacgtgtaaaagcacttgatggttttaaaagcggagaagtacgtgtacttgtagcgact
gatattgtggcacgcggccttgatattgttgagcttccgcatgttgttaactatgactta
ccaaatgtatatgaagattacgtacaccgtattggtcgtacaggtcgtgctggtgcgtct
ggtcatgcgatttcgtttgtaacaactgaagatgcagtagatttatacggcattgagcgc
tttattggggagcttattcctcgtgctgaagaagaaggttttgagccagtaaacccagta
gctgagcgtgcattagatgctcgcccgttaccagctaaaaagcctaagaaaaaacagcct
ttcaataaacctaaatctgatagcagcaagcctaacagtaaaaagccaaacaatggcggt
aatggtacaggccctcgtcgtggtggttctaaaaagccagcagccaaaacagatgataat
gcacaaaacccatgggcaaaacgccaatcggttggtggtaatggccagcgtcgtcgtcgc
acaaataacgattaa
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