Pseudoalteromonas carrageenovora: PC2016_2106
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Entry
PC2016_2106 CDS
T06565
Name
(GenBank) Transcriptional regulator, LysR family
KO
K16516
LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
Organism
pcar
Pseudoalteromonas carrageenovora
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcar03000
]
PC2016_2106
Transcription factors [BR:
pcar03000
]
Prokaryotic type
Helix-turn-helix
LysR family
PC2016_2106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_24
HTH_AsnC-type
HTH_28
Mga
BAR_3
E2F_CC-MB
Motif
Other DBs
NCBI-ProteinID:
QBJ72304
LinkDB
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Position
I:2414128..2415327
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AA seq
399 aa
AA seq
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MKFNNRHLLISLHIKNLKSLSKAANAVHLTQSALTQGIKKLEDELNQPLFVRSHSGMTPT
PSGLFFLNRVERAFEYLDEFSRIIFNSRNKQDGFNRSVTSKQLEALINLVQMKSYTAAAN
KLNLSQPTLHRSIKDLEQLCQKELAVRSPTGIEPTWTANLLNRFAKLFFSELRQGIYEMR
EFNGQMDGSLKVGSLPLARSAIVPLSIIALNNEFPDAQLSIIDGPYQEQLANLLHGEIDI
IVGALRIPVQHSDIEQIPLFKDQLCIVVNAQHPLASRQTISTKELQQLEWVAPNKSTPAW
QVFSSIFVSRGLPPPNHVIECSSQVAVRGILLNSSRAALLPAKQVEVEVQSGILAICPMT
LPDTDRSIGLTIRKDWQPTQMQSRFLTIIKNHTRTLQSS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaataatagacacttactaatatccttgcatattaagaacttgaagtcgtta
agcaaagcagccaatgctgttcacttaacccaatcagcactcactcaaggcattaaaaaa
cttgaggacgaacttaatcaacccctatttgttcgcagccactcggggatgacaccaacg
cctagtggtttatttttcttaaaccgagttgaacgtgcatttgagtatttagatgaattt
tcgagaatcatttttaatagtagaaataagcaagatggctttaatcgctctgtcacttca
aagcagctagaagcgctcataaatttagttcaaatgaaaagctacaccgccgcagctaat
aagctcaatttgtcacaacctaccttgcatcgtagcatcaaagatttagagcaactgtgt
caaaaggagctagcagtgcgctctcctacgggcattgaaccgacgtggacggcaaacttg
cttaatcgctttgcaaagctatttttctctgaattacgtcaaggtatttatgaaatgagg
gagttcaatgggcaaatggatggttctctaaaagtgggtagtttaccattggcacgctca
gctattgtgccattgagtattattgctttgaataatgaattccctgatgcacagctaagt
attatagatggtccataccaagagcagctagctaacttacttcatggtgaaattgacatt
attgtcggtgcattacgcatcccagttcaacatagtgatattgaacaaattccattattt
aaagatcaactttgtattgtagtgaatgctcaacatcctttagcaagtcgccaaacaatt
tcaacgaaagaactgcagcaactagaatgggtagcaccaaacaaaagtacccccgcgtgg
caggtttttagtagcatatttgttagccgaggcctgcccccaccgaaccatgtaatagag
tgtagttcgcaagttgctgtgcgtggtattttattaaacagttcgcgagcggccttgtta
ccagccaaacaagttgaagtagaagtccaatcggggattttagctatatgcccgatgaca
ctgcccgatactgaccgtagtataggactgacgatacgaaaagattggcaacctacccaa
atgcaatcgcgttttttaacaataattaaaaaccatacccgtacacttcaatcaagttag
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