Pseudoalteromonas carrageenovora: PC2016_2135
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Entry
PC2016_2135 CDS
T06565
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03030
DNA replication
pcar03430
Mismatch repair
pcar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PC2016_2135
03430 Mismatch repair
PC2016_2135
03440 Homologous recombination
PC2016_2135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcar03032
]
PC2016_2135
03400 DNA repair and recombination proteins [BR:
pcar03400
]
PC2016_2135
Enzymes [BR:
pcar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PC2016_2135
DNA replication proteins [BR:
pcar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PC2016_2135
DNA repair and recombination proteins [BR:
pcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PC2016_2135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QBJ72329
LinkDB
All DBs
Position
I:complement(2445128..2448619)
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAPEFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPALAITDQMNFCGLVRFYGATHNA
GIKPIVGADFWLRSPEFSDEPCRITILAKDNDGYKNITLLISEAYQRGHVFHRPVIDREW
LVNHKEGLIILSGAKDGDLGKALLKGNPGVIESVVSFYKQHFSDHYYLELVRTNRPLEED
YLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKRRPKRFSQEQYL
KTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGSLKIEDFLVKVSEDGL
EERLQFLFPDEEDRKVKRVEYDERLAIELGVINQMGFPGYFLIVMEFIQWSKDNNIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSA
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIPGDPGMTLAKAFEVEPR
LQEAYDGDSEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDDEGKFPVTQ
FDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMQREGKDPVDINTIPLDDKKSIELL
LRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKLGREE
ISYPDAQYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHHPA
EFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFKFTVNLRGEIVYGIGAIKG
VGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLIYAGALDQLGPEKTQAGR
ATLLASLKDAMRAADQHNKAEQLGQSDLFGLLATEPDEVEQAFIKATGLTDNQWLEGEKD
TLGLYLTGHPINQYRKELRYYTSGKLVDLQPTNRDVLSTAAGLVISARTLINKKGNRWGL
ITLDDKSARIDVRLFPEQFEMYQEMLQVNNILVISGQVSFDNFSGGITMTAREINTIAQA
REKRIKAIKMTLNMVQIEAGFFDKLQKVLEPYKMGTCPIKVYYQRPDALAQLTLGIEWCV
TPSDDLIHKLSLMAAQDVELEFN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaccagagtttgtacatttaagggttcactcagacttttcgatggttgatggc
ctggccaaaaccaagccaatagtcgctaaagcgcaagagcttgagatgccagcgcttgct
attaccgaccaaatgaacttttgtggtttagtgcggttttatggcgccacgcacaatgcg
ggtataaagccgattgtgggtgctgatttttggctacgtagccctgaattttcagatgaa
ccatgtcgtataactattttagcgaaagacaacgacggttataaaaatataactttatta
atatctgaagcgtatcagcgggggcatgtatttcatcgcccggtgattgaccgtgaatgg
ctagtaaatcacaaagaaggattaattattctctcgggcgctaaagatggcgatttaggt
aaagcgcttttaaaaggcaacccgggcgttattgaatctgttgttagcttttacaagcag
cactttagtgatcattactatttagagcttgtacgaactaaccgcccgctcgaagaagac
tacctgcacatggcagtagagcttgccgctaaagaacagttaccggttgtagccactaac
gaagtggtatttttaaagcctgagaactttgaagcgcacgaaatccgagtggccattttt
gatggctacacccttgatgataaacgccgccctaaacgattttcacaagaacaataccta
aaaacgcctgagcaaatggctgagctttttagcgatattccagaggcgctacaaaatacc
gtagaaatagccaagcgctgtaatgtaacggtgcaattagggacttactttttaccagat
taccctactggttcactaaaaattgaagactttttagttaaagtttcagaagacggcctt
gaagagcgactacagtttttattcccagatgaagaagatagaaaagtaaaacgcgttgaa
tacgacgaacgtttagcaatagagcttggcgtaattaaccaaatgggttttccgggttac
ttcttaatcgtaatggagttcattcagtggagtaaagataacaatataccggtaggccct
gggcgtggttcaggtgcaggctcgttagtagcatacgcacttaaaattaccgacctcgac
ccgcttgaatttgatttactctttgagcgattcttaaaccctgaacgtgtatcaatgccc
gatttcgacgtcgatttttgtatggacaggcgcgatgaagtaattgatcacgtatcggca
ttgtatggccgtgatgcggtatcgcaaattatcacctttggtaccatggcggcaaaagcg
gtaattcgcgatgtagggcgtgtacttggtcatccgtatgggtttgttgatcgtatttcg
aagatgatcccaggcgatccaggtatgacccttgccaaagcctttgaagtagagccgcgc
ttgcaagaagcatacgatggcgactctgaggtaaaagatttaatcgacatgtgccgcatc
ctcgaagggtgtacacgtaacgcaggtaaacatgcgggtggcgtagtaatatcgccaacc
actattaccgactttgctgcactttattgcgatgacgaaggtaaatttccggttacccag
tttgataaaaacgacgtagaaaccgcaggccttgttaagttcgatttcttgggtttacgt
accttgaccattttgcagtgggctgtggatatgaccaacgtgcgaatgcagcgcgaaggt
aaggacccagttgatataaataccatcccactggatgataaaaaaagtatagagctatta
ctgcgcgccgaaacaacggcagtgtttcagctagagtcgcgcggcatgaaagacttagta
cgtcgccttaagcccgattgttttgaagatatgattgcactcgtggccttgtttcgtcca
ggtccactgcaatcaggcatggtagataactttatcgaccgaaaactcggccgagaagaa
atctcataccccgatgcgcagtatcagcacgaaagcttaaaaccaatactcgatcctact
tacggcattattttgtatcaagaacaagtaatgcaaatagcgcaggtactagcaggctat
acgcttggtggcgccgatatgttacgccgtgcaatgggtaagaaaaaacccgaagagatg
gcaaaacagcgttcaacgtttgaagatggcgcccgaaataacggcattgacggcgagcta
gccattaaaatcttcgacttggtagaaaagttcgcaggttatggttttaataaatctcac
tcagcggcatacgcattagtatcgtatcaaacgctgtggatgaaaacgcaccacccagct
gagtttatggctgcggtaatgtcggccgatatggataacaccgacaaaatagtaattttg
gtagatgaatgtgaaaacatgaaacttaccttattaccgccagatgtaaacgctggtgag
tttaagtttacggtaaacctgcgaggcgaaattgtttacggtataggcgcaattaaaggc
gtaggtgaagcgccggtagatgctattttagaagcacgcgcaaaaggcggcccatttaaa
gacttatttgatttttgtgcccgtgtagatttaaaacgcttaaataaacgtgttaccgaa
aaattaatttatgccggtgcacttgatcagctcggtccagaaaaaacccaagcagggcgt
gccactttactggcaagtttaaaagatgccatgcgtgcagccgatcagcacaacaaggca
gagcagcttgggcaaagcgatttatttggtttattagccaccgagcctgatgaagtagaa
caagcctttattaaagccacgggtcttacagataaccaatggcttgaaggtgaaaaggat
acactaggcctttatttaacagggcatccgataaatcagtaccgaaaagaacttaggtat
tataccagcggtaagctggtggatttacagccaactaatcgtgatgtactctctacagcg
gctggtttagttatttcagcgagaaccttaattaataaaaaaggaaatcgttgggggtta
ataactttagatgacaagagcgcccgtattgatgtacgcttgtttccagaacagttcgaa
atgtaccaagaaatgcttcaagttaacaatatcttggtaatatctggacaggtcagcttt
gataacttctccggtggcattacaatgaccgccagagaaataaacaccattgctcaagcg
cgtgaaaaacgtattaaggcgattaaaatgacgctgaacatggtgcaaatcgaggcaggt
ttcttcgataaattacaaaaagtactcgaaccttataaaatgggaacgtgtccgatcaag
gtttattaccaacgccccgatgcgttggcgcaattaaccctagggatcgaatggtgtgtt
acgccgagcgacgacttaattcataagttatcactcatggcggcacaagatgtagaacta
gaatttaactga
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