Pseudoalteromonas carrageenovora: PC2016_2667
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Entry
PC2016_2667 CDS
T06565
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03410
Base excision repair
pcar03430
Mismatch repair
pcar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PC2016_2667
03430 Mismatch repair
PC2016_2667
03440 Homologous recombination
PC2016_2667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcar03400
]
PC2016_2667
DNA repair and recombination proteins [BR:
pcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PC2016_2667
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PC2016_2667
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PC2016_2667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Glyco_transf_4
T6SS_HCP
Motif
Other DBs
NCBI-ProteinID:
QBJ72857
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Position
I:complement(3041012..3042781)
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AA seq
589 aa
AA seq
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MAFFCLFILNLKVSNCMKKLIIARENVDDSHLPSNLHPVIKQIYATRNVINADELNNSAA
TLHDFKLFKDIDKASELLVNALNAQSRILIVGDFDADGATSTATLMQGLEMFGFKHLDYL
IPDRFSLGYGLSPALAEQIVQIKPDLVITVDNGISCIAGIDILKAVGIKVLVTDHHLQGE
QLPNADAIVNPNRHECNFPSKSIAGVGVAFYLLIALRSVMREQGYFEQQPPPNLANLLDI
VALGTVADVVALDANNRTLVHQGLARIRSGNTRPGITALIEVANRNAARLSASDFGFSLA
PRLNAAGRLDDMSLGIACLLSNDINQARRIAGELDSLNHARREIEQGMQAEAQAVLDRLA
FTDDNIPDAICLFQDDWHQGVIGILAGRLKEKYHRPTVIFAGGENGEIKGSCRSIEGLHM
RDLLEGLNTADPHLINKFGGHAMAAGLSINEQNFNDFKKAFDAAVTAQLSEESKRCIVFT
DGELPNECFTMEFAQLLKQSGPWGQQFPEPVFEHTFEVIQQRIVGEKHLKLVLKHQSGRL
VDAIAFGIDVKEWPDTEARFVKVAYQLDINEFRGKFSLQLIVRELEKVY
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggcctttttttgtctttttattttgaatttaaaagttagcaattgcatgaaaaaactg
atcattgcgcgagaaaacgttgacgactcacacctaccgagcaacttacaccccgttata
aaacaaatatatgccacgcgaaatgtaattaatgctgatgagctaaataacagtgcagct
acacttcacgacttcaaactatttaaagacatagacaaagcaagcgagttgttagtaaat
gctttaaacgcgcaaagtcgtattttaattgttggcgattttgatgccgatggcgcaact
agcacagctactttaatgcaaggccttgagatgtttggctttaagcatttagattaccta
ataccagacaggtttagcttaggttatggtttaagtcccgcgcttgcagagcaaatagta
caaataaaacctgatttagtgatcaccgtagataacggcatatcgtgtattgccggtatt
gatattttaaaagcggttggcataaaagtgttggtaacagatcaccacttacaaggtgag
caactccctaatgccgatgcaatagtaaaccctaataggcacgagtgtaacttcccgtct
aaatcaatagcaggggttggtgttgccttttacttacttattgcccttagaagcgtaatg
cgcgagcaaggctactttgaacagcaaccaccaccaaatttagctaacctcctagatata
gttgcactgggtacagtggccgatgtggttgcgcttgatgcaaataaccgcaccttagta
catcaaggtttagcgcgtatacgaagtggtaatactcgcccgggtattactgcacttatt
gaagtagctaatcgaaatgcagcgcgcttaagcgccagtgattttggtttttcgctagcg
ccgcgtttaaatgccgcaggtcgattagatgatatgagcttaggcatagcgtgtttgtta
agtaacgatataaaccaagcaaggcgcattgctggtgagcttgatagcttaaaccatgct
aggcgcgaaatagagcagggcatgcaagccgaggcgcaagccgtacttgataggctcgcc
tttaccgacgataacattcccgatgctatttgtttgtttcaagatgactggcaccaaggt
gttattggtattttagctggccgcttaaaagaaaaatatcatcgtccaaccgttattttt
gctggtggcgaaaacggcgaaataaaaggttcgtgccgctctattgaagggctgcacatg
cgcgacctactcgaagggctaaataccgccgacccacatttaattaataaatttggtggc
cacgcaatggctgctggcttgagtattaacgagcaaaactttaacgactttaaaaaagcg
tttgatgcagcagtaacagctcagcttagcgaagaaagcaaacgctgtattgtatttacc
gacggcgagctgccaaacgaatgctttacgatggagtttgctcagctattaaagcaatca
ggcccatggggacagcaatttccagagccggtatttgagcatacctttgaagttattcaa
cagcgtattgtgggcgaaaagcatttaaaattagtgcttaaacatcaatcagggcgatta
gttgatgccattgcctttggtattgatgtaaaagaatggcccgacaccgaagctcgtttt
gttaaagtggcgtatcagctcgacataaacgagtttagaggtaagtttagcttgcaatta
atagtaagagagcttgaaaaagtgtattaa
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