Pseudoalteromonas carrageenovora: PC2016_3046
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Entry
PC2016_3046 CDS
T06565
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC2016_3046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcar03019
]
PC2016_3046
Enzymes [BR:
pcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PC2016_3046
Messenger RNA biogenesis [BR:
pcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PC2016_3046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBJ73231
LinkDB
All DBs
Position
I:complement(3466937..3468214)
Genome browser
AA seq
425 aa
AA seq
DB search
MTKTHLTDKKFSDFAIAPEVVAGLTENGFEYCTPIQAKCLPYICDGRDIAGQAQTGTGKT
LAFLTATCHRLLQSSKAPSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGED
YEKQRAQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMF
RRMPDTSQRLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIKEELFHPSQEDK
IKLLLTLIEEEWPDKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFT
KGELDFLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQ
YAYNLHEIEEYIEHSIPLSHYDKTALLDDLTKPTIQRKRNYSSGPRNRSNNNGRRPNNSY
QKGRS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgactaagacacatttaaccgataaaaagttttcagactttgctatcgcaccggaagtg
gttgccggtttaaccgagaatgggtttgaatattgcacacctattcaagcaaaatgccta
ccttatatttgtgatggccgcgatattgcgggccaagctcaaactggtacaggcaaaacg
ttagcttttttaacagctacgtgccatcggttattacaatctagcaaagcacctagtaaa
catccaagagccctgatcatggccccaactcgggagcttgcgattcagatacacaaagat
gcaaaaattttagcgccgcactgtaatcttaacttaggtttagtatatggtggcgaagat
tacgaaaaacaacgtgcacaattagaaaaaggcgttgatattttaattggtactacaggt
cgccttatcgatctgtacaagcaaggctgttacacccttaatgaaattgaggtagtcgtg
ctagatgaagccgatcgtatgttcgatttaggctttataaaagatattcgttatatgttc
cgccgcatgccagatacatcgcagcgtttaaacttattattctctgcaacgctttcgtac
cgtgtacaagagcttgcgtttgaacatatgactaaccctgaacacgtgcaaattgaacca
gacgtaaaaacaggcaagcgtattaaagaagagctattccatccttcgcaagaagacaaa
attaagctgttattaaccttaattgaggaagaatggccagataaagccattgtatttgct
aatacaaagcacagctgtgaaacagtttatgcgtggctaaaagctgacgggcaccgcgta
ggtatgctaactggcgatgttaatcagaaaaaacgtcagtctattttagctcaattcact
aaaggtgaattagactttttagtagcaactgatgttgcagcacgtggtttgcatattcct
gaagtaagtcatgtgtttaactttgatctacctgatgattgtgaagattacgttcatcga
attggccgtaccggtcgcgcaggtgcctctggccatgcaattagttttgcttgtgagcaa
tatgcttataacttgcatgaaattgaagaatatatagagcacagcattcctttatcacat
tatgataaaacagcattgctagatgatttaacaaagcctactattcaaagaaagcgcaac
tattcttcaggcccacgtaatcgtagtaataacaacggacgtcgcccaaataatagttac
caaaaaggacggtcgtaa
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