Pseudoalteromonas carrageenovora: PC2016_3048
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Entry
PC2016_3048 CDS
T06565
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC2016_3048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcar03021
]
PC2016_3048
03019 Messenger RNA biogenesis [BR:
pcar03019
]
PC2016_3048
Transcription machinery [BR:
pcar03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PC2016_3048
Messenger RNA biogenesis [BR:
pcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PC2016_3048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
AAA
OB_RNB
Fungal_virus_P2_C
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QBJ73233
LinkDB
All DBs
Position
I:3468814..3470073
Genome browser
AA seq
419 aa
AA seq
DB search
MHLRELKDKSIKELVNLAESMGLENVARLRKQDIIFAILKAHAKGGENIFGGGVLEILQD
GFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVN
FDKPENSRTKILFENLTPLHANERFRMERGNGSKEDITARVLDLASPIGRGQRGLLVAPP
KAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKPDELQKLWILRKIVHEMSEIDAMEFLIDKLSMSKTNDEFFDSMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcatttacgcgaattaaaagacaagtctataaaagaacttgtaaacttagctgagtcc
atggggctcgaaaacgtagcccgcttaagaaagcaagatattatttttgccattcttaaa
gcccacgccaaaggcggagagaatatcttcggcggcggtgtattagagattttacaagat
ggctttggctttttgagatcatcagaagcctcttacttagctggcccagatgacatttat
gtttcacctagccaaattcgccgtttcagcatgcgtactggcgattctatctcaggcctt
atccgcccacctaaagacggcgaacgttactttgctttattaaaagtaaacgaagttaac
tttgataaacctgaaaactctcgcactaaaattctttttgaaaaccttaccccactacat
gcaaacgaacgttttcgtatggaacgtggtaacggcagtaaagaagatattaccgcccgt
gtacttgatttagcatctccaattggccgcggccaacgtggtttgttagtagcaccgcct
aaagcgggtaaaacaatgctactgcaaaacattgcacaatcaatcactcataatcaccct
gatgttacattaatggttttacttattgatgaacgtccggaagaagttactgagatgcaa
cgcctagttaaaggtgaagtaattgcatcaacatttgatgaaccagcttctcgccacgtg
caagttgccgaaatggttatcgaaaaagcaaaacgtttagttgagcacaaaaaagatgtc
gttatcttattggattcaattacacgtttagcacgtgcttataacacagttattccttca
tcaggtaaagtacttacaggtggtgttgatgctaatgcacttcacaaacctaagcgcttc
tttggtgctgcacgtaacgttgaggaaggcggtagtttaactattatcgcaacagcgctt
atcgatactggctctaaaatggatgaagttatctacgaagagtttaaaggtactggtaat
atggaactacacttaaatcgtaagattgctgaaaaacgtgtattccctgctatcgacttt
aaccgctcaggtactcgtcgtgaagaattacttactaaaccagatgagctacaaaagctt
tggattttacgtaagattgttcatgaaatgtcagagattgatgcgatggaatttttaatc
gataaactatcgatgagtaaaaccaacgatgaattctttgattcaatgagacgccaataa
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