Pseudoalteromonas carrageenovora: PC2016_3753
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Entry
PC2016_3753 CDS
T06565
Name
(GenBank) ATP-dependent DNA helicase Q4
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC2016_3753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcar03019
]
PC2016_3753
03400 DNA repair and recombination proteins [BR:
pcar03400
]
PC2016_3753
Enzymes [BR:
pcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PC2016_3753
Messenger RNA biogenesis [BR:
pcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PC2016_3753
DNA repair and recombination proteins [BR:
pcar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PC2016_3753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
AAA_22
SHCBP_N
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QBJ73921
LinkDB
All DBs
Position
II:complement(666272..668200)
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AA seq
642 aa
AA seq
DB search
MTTPLIQSLEQHFGFSQFRTGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTAMHLPNLT
LVVSPLLALMKDQISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKN
ERFREFISQVALSMLVVDEAHCISEWGHNFRPDYLKLPRYREELNIPLVLLLTATATKKV
KRDMSERFNIAPECIVQTGFYRANLDLSVLSVKTADKNTELTNIVRAQNGPGIVYVTLQQ
SAEQVANTLSAQGIQAVAYHAGLEDTLRWQIQDDFMACKINVVVATIAFGMGVDKSDIRF
VIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGIEYVIN
DIKAQPQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQYAYYADFKYKFLVDKNE
LLSQFDEQRQAFLTQIFSHTDFKKIWGTLNFDTLTQAAQVDRKRVVAALDYLAEKNLITL
ETKRITQVYKVHSEVINNPELAKQLHSYFIEKEQAEIKRIAALVRFFELQSCLSYNLARY
FDDQNAPAQCGHCSVCRGNAVKLEYSIEPAHIADDVVYQKVDEFLAHMATKGIHSVGIET
QCRFLAGMSVPLFARNKVRQLSGFALCEQMRYSDIKAKLLAR
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgccattaattcaatcacttgagcaacattttggttttagccaatttagaaca
gggcaacagcaaaccattgagcagcttttaaatgggcaatcgtcactggctatattccct
acggggtcgggtaagtcgttgtgttatcagctaacggctatgcatttaccaaacttaacc
ttggtggtatcgcctttacttgcattgatgaaagatcaaattagctttttaaatagcaaa
ggtatttacgcggcaagccttgattcgagccaagaccaaatgcaaagcagcaccgtaatg
aacgatgtgcgaaatggtaaaattaaagtgttaatggtgtcggttgagcgttttaaaaac
gagcgttttagagagtttataagccaagttgcgctgtctatgctggtggtagacgaagcg
cattgtatatctgaatggggtcataactttagacccgattaccttaaattaccgcgatac
cgcgaagagctaaatattccactggtactattactcaccgccacagccactaaaaaagta
aaacgcgacatgagcgagcgttttaatattgccccagagtgtattgtacaaaccggcttt
taccgcgctaacctcgatttaagcgtgctaagtgtaaaaacggctgataaaaacactgag
cttacaaacatagtgcgtgcgcaaaatggcccaggtattgtgtatgtaacccttcagcaa
agtgctgagcaagtggctaatacgctaagtgcgcaaggtattcaggcggttgcgtatcat
gcggggcttgaagatacacttaggtggcaaattcaagatgattttatggcgtgtaaaatt
aacgttgttgtggcaactatagcctttggtatgggcgttgataaatcagatattcgcttt
gttattcattacgatttaccaaaatcaattgaaaactacagccaagaaattggccgcgca
gggcgcgatggcaacccatcaaactgctacaccttggctaatttagatggcctaaacaca
gtagaaaactttgtgtacggcgatactcccgagcttagcggcattgaatacgtaattaac
gatattaaagcccagccgcagcaatgggaaatgcaagagtacagcctttcaagcgaaagt
aatattcgccaattagcgcttaaaaccttgctggtacaactcgaaatgcaaggcgcaata
acgccgcagtacgcctattacgccgattttaaatacaagtttttggtagataaaaacgag
ctacttagccagtttgacgagcagcgccaagcctttttaacacaaatatttagccacacc
gattttaaaaaaatatggggcacgcttaatttcgacacccttacccaagccgcgcaagtt
gaccgtaaacgcgtagtggccgcgcttgactacctagccgaaaaaaacctaataaccctt
gaaaccaaacgtattacccaagtttacaaagtgcatagtgaggttataaataaccctgaa
cttgcaaagcaattacacagttattttatcgaaaaagaacaagccgagattaaacgtata
gctgcattggtgcgcttttttgaattacaaagctgcttaagctataacttagcgcgctac
tttgacgaccaaaacgcgccagcgcaatgcgggcattgtagtgtatgccgtggtaatgct
gttaagcttgaatattcaatagagcctgctcacattgccgatgacgttgtttatcaaaaa
gtggatgagtttttagcgcacatggcaacaaaaggtattcacagtgtaggtattgaaact
cagtgccgctttttagcgggcatgagtgtaccgttatttgcacgtaataaagtgcgccaa
ctcagcggctttgcgctttgcgagcagatgcgttatagcgatataaaagcaaaactacta
gcgcgttaa
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