Pseudoalteromonas carrageenovora: PC2016_3822
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Entry
PC2016_3822 CDS
T06565
Name
(GenBank) Exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pcar
Pseudoalteromonas carrageenovora
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcar03400
]
PC2016_3822
DNA repair and recombination proteins [BR:
pcar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PC2016_3822
Archaeal homologous recombinant proteins
PC2016_3822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
SbcD_C
Metallophos_2
DNA_pol_E_B
Fer4_12
Motif
Other DBs
NCBI-ProteinID:
QBJ73989
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Position
II:755952..757199
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AA seq
415 aa
AA seq
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MKVLHTSDWHLGQQFYEHDRRVEHQAFFTWLLATLVEQQIDLLLVAGDIYHTATPSASAE
NQLYQFIKDVKKQCPQLHVVLIAGNHDSANRILAAQPLLAQFDTHVVGRFDVSAPSDIII
EINTNNKRAVIAAMPFLRSSDISSLSQTKNGPSYAQGVAKAYELALEHAYKINEQNSPLI
VMGHLHAKGGDISSDSERNLVIGGEESISANVFGSKANYVALGHLHKAQQVAKNDAIRYS
GTPIPMSFSERNYTHQVNIIEFKSDEKQSISTTVNPLYIPRSADVIILPKGESVPLDELC
EQIKTLDTAQSTLAPYLRVKLKSSDTDTTFREQIEQALEGKNVRFCGIERVREKSATDDN
ESVFEDLSEVEMLNPQNLLEQAFANDKDMAGQSVPDELKALLSDVINELTEQEQL
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcctccacacctcagattggcaccttggccaacaattttacgaacacgaccgc
cgtgtagagcatcaagcattttttacctggttacttgccacacttgttgagcagcaaata
gatttattattagttgcaggcgacatttatcatacggcaacaccaagcgctagcgccgaa
aaccaactttatcagtttataaaagacgtaaaaaagcagtgcccacaattacatgtggtt
cttatcgcgggcaaccatgactctgcaaatcgtattttggcggctcagcctttgcttgct
caatttgatacacacgtagtagggcgttttgatgtatcagcgcctagcgatattattata
gaaataaacactaataataaacgcgctgtaatcgccgctatgccttttttacgctcaagc
gatataagttcactaagccaaacaaaaaacggccctagctacgcacaaggcgttgcaaaa
gcttatgagcttgcccttgagcatgcttataaaattaatgagcaaaattcaccgttaata
gttatgggccatttacatgctaaaggcggcgacatatcaagcgattcagagcgtaactta
gtgataggcggggaagaatcaatttcagccaatgtatttggcagtaaagccaactatgtc
gctctaggccatttacacaaagcgcaacaagttgctaaaaatgacgctattcgctacagc
ggcacgcctattcctatgtcgttttcagagcgtaattacactcaccaagttaatattatc
gaatttaaaagcgatgaaaaacagagtattagcacaactgtaaaccccctttacattccg
cgctcagccgatgttattattttaccaaaaggggagtctgtgccattagatgaactgtgc
gaacaaattaaaaccctcgatacagcgcaaagtacattagcgccatatttacgcgtaaag
cttaaatcaagtgataccgacaccactttcagagaacaaatagaacaagcacttgagggc
aaaaatgtaagattttgcggtatcgaacgagtacgtgaaaaatcagcaacagacgacaac
gagtctgtgtttgaagatttaagtgaagttgaaatgctaaatccacaaaatttattagag
caagcattcgcaaatgataaagatatggccgggcaaagtgtacccgatgaactaaaagca
cttttaagcgatgttataaatgagctgacggagcaagagcaactatga
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