Pseudomonas alvandae B21-020: LOY40_01275
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Entry
LOY40_01275 CDS
T08625
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
pcas
Pseudomonas alvandae B21-020
Pathway
pcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOY40_01275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcas03019
]
LOY40_01275
Messenger RNA biogenesis [BR:
pcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LOY40_01275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX
NUDIX_4
Nudt16-like
NUDIX_2
Motif
Other DBs
NCBI-ProteinID:
UVM72843
LinkDB
All DBs
Position
complement(295470..295949)
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AA seq
159 aa
AA seq
DB search
MIDPDGFRPNVGIILTNDAGQVLWARRINQDAWQFPQGGINPQETPEEALYRELNEEVGL
EREDVEILACTRGWLRYRLPQRLVRTHSQPLCIGQKQKWFLLRLISNEQRVRMDLTGKPE
FDGWRWVSYWYPLGQVVTFKREVYRRALKELAPRLLTRD
NT seq
480 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgatcccgatggtttccgtcccaatgtggggatcattcttacgaatgatgctggg
caggtgctatgggcacgccgtatcaatcaagacgcctggcagtttccccagggtgggatc
aatccccaggagacgccggaagaggccttgtaccgcgagttgaatgaagaagtcgggctg
gagcgagaggatgttgagatactcgcctgcacccgaggctggttgcgctatcgtttgccg
caacgcctggtcaggacgcacagccagccgctgtgcatcggccagaagcagaaatggttt
ctcctgcgcctgatctccaacgagcagcgggtgcggatggatttgaccggtaaaccggag
ttcgatggctggcgctgggtcagctattggtatccgttgggccaggtggtgacattcaag
cgcgaggtgtatcgacgcgcccttaaagagcttgccccgcgcctgctgacgcgcgactga
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