Pseudomonas canavaninivorans: LOY40_04405
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Entry
LOY40_04405 CDS
T08625
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pcas
Pseudomonas canavaninivorans
Pathway
pcas02020
Two-component system
pcas02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LOY40_04405
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LOY40_04405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcas03021
]
LOY40_04405
Transcription machinery [BR:
pcas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LOY40_04405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
RRP4_S1
DUF4741
HTH_IclR
HTH_21
TrmO_C
Motif
Other DBs
NCBI-ProteinID:
UVM73419
LinkDB
All DBs
Position
complement(1021336..1022829)
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AA seq
497 aa
AA seq
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MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNSD
PLADNVEQKTPAEIPEPSYQEAAPTVDNIEDGEWNERIPNDLPVDTAWEDVYQTSASSLP
SGDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEI
LEAFDPELDIELDEVEAVLHRIQQFEPAGIGARSLGECLLLQLRQLPAKTPWLAEAKRLV
TDYIDLLGGRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEPEYVVPDVIVRK
HNDRWLVELNQESVPKLRVNAQYAGFVKRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacgccgcagctgcaa
caggccatccgcctgctccaattgtcgaccctggacctgcaacaggaaatccaggaggcc
ctggagtccaatccgatgctcgaacgccaggaagaaggcgacgacttcgacaactccgat
ccgctggccgacaacgtcgaacagaaaacccctgccgaaatcccggaaccgtcctatcag
gaagccgccccgacggtggataacatcgaggacggcgagtggaacgaacgcattcccaac
gacctgcccgtggatacggcatgggaagacgtctaccagaccagcgccagcagcctgcca
agcggcgatgacgacgagtgggacttcaccacccgcacctccgccggcgaaagcctgcaa
agccacttgctgtggcaactgaacctggcgccgatgtccgacaccgatcgcctgatcgcc
gtgaccctgatcgattgcatcaacaaccagggctacctggacgagacactcgaagaaatt
ctcgaagctttcgaccccgagctcgacatcgagctggatgaggtcgaggcggtcctgcac
cgcatccagcagttcgaacccgccggcatcggcgcccgcagcctgggcgaatgcctcttg
ctgcaactgcgccagttgcccgccaagacaccgtggctggccgaagccaagcgactggtc
accgactacatcgacttgctgggcggccgcgactacagccaactgatgcggcgcatgaaa
ctcaaggaagacgagctgcgccaagtcatcgagctggtgcaaagcctcaatccacggccc
ggctcgcagatcgaatccaccgagcctgaatacgttgtccccgacgtgatcgtgcgcaag
cacaatgatcgctggctggtggagctcaaccaggaatcggtgccgaaacttcgggtcaac
gcccaatacgccggtttcgtgaaacgcgccgacaccagcgccgacaacacgttcatgcgc
aaccagttgcaggaagcgcgctggttcatcaagagcctgcagagccgcaacgaaaccctg
atgaaagtggcgacccagatcgtcgagcatcagcgcggcttcctggaatacggtgatgaa
gcgatgaaaccgttggtcctgcatgacattgccgaggcagtgggcatgcacgagtcgacg
atttcacgggtgaccacccagaaattcatgcataccccgcggggaatctatgaattgaaa
tattttttctccagccatgtcagcacctcggaaggcggcgaatgctcgtccacggccatc
cgcgcgatcatcaagaaactggtcgccgcggaaaatcagaaaaagccgttgagtgacagc
aagatcgctggtttactggaggcacaaggcattcaggtggcccgccgtaccgtcgccaaa
taccgcgaatccctcgggatcgcaccttcgagcgaacgcaagcggttgatgtaa
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