Pseudomonas alvandae B21-020: LOY40_08230
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Entry
LOY40_08230 CDS
T08625
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcas
Pseudomonas alvandae B21-020
Pathway
pcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOY40_08230 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcas03019
]
LOY40_08230 (rne)
03009 Ribosome biogenesis [BR:
pcas03009
]
LOY40_08230 (rne)
Enzymes [BR:
pcas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LOY40_08230 (rne)
Messenger RNA biogenesis [BR:
pcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOY40_08230 (rne)
Ribosome biogenesis [BR:
pcas03009
]
Prokaryotic type
rRNA processing factors
LOY40_08230 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
DUF8501
Motif
Other DBs
NCBI-ProteinID:
UVM74125
LinkDB
All DBs
Position
complement(1824658..1827855)
Genome browser
AA seq
1065 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHTNQSSYEIAAAAAEVEDVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPVATPAAAPEPSLFKGLVKSLVSLFATKEEPAAPAVVAKPAATERPARNEERRNGR
QQTRNRNGRRDEERKPREERAPREERAPREPREERQPREVREEVPAVAREERAPRPPREE
RQPRAPREDRKPRGEREERVRELREPLDAAPAAAAATAEERPARQPREERAPRPPREERQ
PRAEQAAAAASEEEVLNAEEPLQEDGQDTAEGDRPRRRSRGQRRRSNRRERQRDANGNVI
EGSEESESTENAEAPSAADLAAGLAVTAAVASSAISAPAEAQANEQAERATAAVENAPVE
APVVESTAPVEVTASPEVELAPVREAQPEAEVAAEPAPVVEAPIVAAEPVVEAPAEEKAP
EPAREEQTAFNWTAEPAAPAPVVEPEPTPEPVQAVEPEVVEPAPVIEAPVAVEAPAPAQE
SAPASALTANGRAPNDPREVRRRKREAERLQKEAEQAAAAAAQAPAAEPAPVVEEVTEAA
PAPVAETPAEPASALDEPQHTAEEVEVAPRHTEALEKEHEPKPHA
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagac
ggccagcgcctctacgacctggatatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaag
gccccagaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcattgtc
caggtcgaaaaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctc
gccggccgctacctggtcctgatgccgaacaacccgcgtgccggcggcatttcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagccctcaatggcctggtcgcacctgcc
gacatgggcctgatcgttcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgttcc
gcgccgttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgtcgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgtc
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtc
gagctgccgtccggcggttccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcccgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagccgccgaagaaatcgcccgtcagttgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaggtc
cgtgaatgcctggaagccgaccgcgcccgcgtacaggtcggtcgtatctcgcgcttcggc
ctgctggaaatgtcccgtcaacgcctgcgtccatccctgggcgaaagcagcggcatcgtt
tgcccgcgttgcaacggcaccggcatcatccgtgacgtcgaatcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcccaagtg
ccgatcccggtggccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgcatcgtcatcctgccgaacgatcacctcgagacgccgcacttc
gaagtgcagcgcctgcgcgatgacagcccggaagcccacaccaaccagtccagctacgaa
atcgctgctgccgctgccgaagtggaagacgtccagccagctgccgccactcgcaccctg
gttcgccaggaagcagcggtcaagaccgctccggcccgcgccaacgcaccggttccgacc
gaagtggccgctccggttgccactccggccgcagcaccagagccaagcctgttcaaaggc
ctggtgaagtccctggtcagcctgttcgccaccaaggaagaacctgccgccccggccgtc
gtcgccaagccggccgccaccgagcgccctgcccgcaacgaagaacgccgcaacggtcgc
cagcagacccgcaaccgcaacggtcgtcgcgacgaagagcgcaagccccgcgaagaacgt
gcaccgcgtgaagagcgcgcgccacgcgagccgcgtgaagaacgccagcctcgcgaagtc
cgtgaggaagtgccagccgtagcccgcgaagaacgcgcaccgcgtccgccgcgtgaagag
cgtcagcctcgcgcaccgcgtgaagatcgcaagccgcgtggcgagcgtgaggaacgtgtt
cgcgaactgcgcgagccactggatgccgccccggccgctgccgccgccaccgctgaagag
cgtccggcccgccagcctcgtgaagaacgcgcaccgcgtccgccacgtgaggaacgccag
ccacgcgccgagcaagccgccgccgctgccagcgaagaagaagtgctgaacgccgaagag
ccgttgcaggaagacggccaggacaccgccgaaggcgatcgtccacgtcgccgctcccgc
ggccagcgtcgtcgcagcaaccgtcgtgagcgtcagcgcgatgccaacggcaacgtgatc
gaaggttcggaagaatccgagtccaccgagaacgccgaagcgccaagcgccgctgacctg
gccgccggcctggccgtcactgcggccgttgccagcagtgcgatcagcgccccagccgaa
gcccaggcaaacgagcaggctgagcgcgccaccgctgcggtggagaacgcgccggttgaa
gcgcctgtcgtcgaatccactgccccggtagaagtcaccgcttcgccagaagtggaactc
gcgccggtacgtgaagcccagcctgaagctgaagtcgccgccgagcctgcgcccgttgtt
gaagcgcccatcgtcgctgccgaaccggttgtcgaagcaccggcagaggaaaaggcgcca
gagcctgcccgcgaggagcagactgcgttcaactggaccgcagagcccgccgcaccggca
cctgttgtcgagcctgagccaacgccagagcccgtgcaagcggtcgagccagaagtggtc
gaacctgctccagtgatcgaagcaccggtggctgtcgaagcgcctgcccccgcgcaagag
tctgcccctgccagtgccctgaccgcgaatggccgcgcaccgaacgatccacgtgaagtg
cgtcgccgcaagcgtgaagccgagcgcctgcagaaggaagctgaacaagccgccgctgcc
gccgctcaagcgcctgctgccgaaccggctccggtcgtggaagaagtcaccgaggcagcc
cctgccccggtcgctgaaaccccagccgaaccagcctcggcgctcgacgaaccccagcac
accgctgaagaagtcgaagtcgcgccacgtcacactgaagccttggaaaaagagcacgag
cctaaacctcacgcctga
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