Pseudomonas alvandae B21-020: LOY40_10560
Help
Entry
LOY40_10560 CDS
T08625
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcas
Pseudomonas alvandae B21-020
Pathway
pcas02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LOY40_10560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcas03021
]
LOY40_10560
Transcription machinery [BR:
pcas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LOY40_10560
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
GerE
HTH_24
HTH_11
HTH_40
HTH_20
HTH_36
HTH_38
TetR_N
HTH_29
HTH_Tnp_4
HTH_28
HTH_10
Motif
Other DBs
NCBI-ProteinID:
UVM74569
LinkDB
All DBs
Position
2321195..2321716
Genome browser
AA seq
173 aa
AA seq
DB search
MSANDLFLRSAVNDLYCDHHGWLQGWLRKRLGNTFDAADLAQDTFVRVIKARSALDIREP
RPYLSMIAKGLLVDLFRRRSLEQSYLDALAAMPERQQPSLEEQAILFQALMEIDRLLQGL
GPRVKQVFILSQFNGLTYPQIAERLGVSVRTVNNHMAKAMEHCCLMQIQLQLA
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccaacgatctgttcttacgcagtgccgtcaacgatttgtattgcgaccatcac
ggctggcttcaaggctggttacgcaagcgccttggtaacacgttcgatgcggctgatctg
gcccaggatacgttcgttcgcgtgatcaaggcgcgctcggccctggatatacgcgagccg
cggccctatctgtcgatgatcgccaaaggcttgctggttgatctttttcgccgccgctcc
cttgagcaatcgtacctggatgcgctggccgccatgcctgaacggcagcagccgtcgctg
gaggagcaggcgattctgttccaggccctcatggaaatcgatcgactgcttcaagggctg
ggaccgcgggtcaagcaggtgttcatcctgtcgcaattcaacggcctgacgtacccgcag
atcgccgagcgcctgggtgtcagcgtgcgcacggtcaataaccatatggccaaggccatg
gaacactgctgcctgatgcagatccagttgcagcttgcatga
DBGET
integrated database retrieval system
