Pseudomonas alvandae B21-020: LOY40_13105
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Entry
LOY40_13105 CDS
T08625
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
pcas
Pseudomonas alvandae B21-020
Pathway
pcas02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
LOY40_13105 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pcas02044
]
LOY40_13105 (tssC)
Secretion system [BR:
pcas02044
]
Type VI secretion system
Imp/Vas secretion system core components
LOY40_13105 (tssC)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
DUF3135
Motif
Other DBs
NCBI-ProteinID:
UVM75044
LinkDB
All DBs
Position
2893653..2895188
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AA seq
511 aa
AA seq
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MSTESSNVQSRGATVLAEDKGVYAALFSKINLNPVAELGSIETFQHAEALSEASVDERVT
AAVSVFLKLLKESPQKVERLDKVLLDEHIASLDTQISRQLDAVMHHPDFQRVESTWRGVK
SLIDQTDFRQNVRIELLDISKTDLVRDFEDAPEIAQSGLYLHTYTREYDTPGGEPIAAAI
SNYEFDRSPQDIALLRNISKVAAAAHMPFIGSVGPAFFGKQSMEEVAAIKDIGNYFDRAE
YIKWKAFRDSDDARYVGLTMPRVLGRLPYGPDTIPVRSFNYVESVKGPDHDKYLWTNASF
AFAANMVKSFIANGWCVQIRGPQSGGAVTDLPIHLYDLGTGNQVKIPSEVMIPETREFEF
ANLGFIPLSYYKNRDYACFFSASSAQKPALYDTPDATANSRINARLPYIFLLSRIAHYLK
LIQRENIGTTKDRRLLELELNKWIGGLVTEMTDPGDALQASHPLRDAKVTVEDIEDNPGF
FRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgtctactgaaagttctaacgtgcaatcgcgcggcgctacagtgttggctgaagacaag
ggcgtttatgcggcgctgttcagcaagataaatttgaaccctgtcgctgagttgggaagt
atcgaaactttccagcacgccgaggcgttgtccgaggcatcggttgatgaacgggtcacc
gccgcggtcagcgtgttcctgaagttgctcaaggaatcaccgcagaaagtggagcgattg
gacaaagtgctcctcgacgagcatatcgcttcgctggacacgcagatcagtcgtcaactc
gatgcggtcatgcatcacccggacttccaacgcgtcgaatcaacctggcgcggcgtcaag
tccttgatcgaccagacggattttcgccagaacgtgcgcatcgaattgctggatatcagc
aagactgacctggtgcgggattttgaagacgcccccgaaatcgcccagagcggtttgtac
ctgcacacctacacccgcgaatacgacacgccaggcggggagccaatcgcggccgccatt
tccaattacgaattcgatcgcagcccgcaggacattgccttgctgcgcaatatttcgaaa
gtggccgcggcggcgcacatgccctttatcggttcggtggggccggcattctttggcaag
caatccatggaggaggtggccgccatcaaggacatcggcaattacttcgatcgagccgag
tacatcaagtggaaggccttccgtgacagtgacgatgcgcgttacgtcggcctgaccatg
ccgcgggtcctggggcgcctgccctatgggccggatacgattcccgtgcgcagcttcaac
tacgtcgaaagcgtcaagggccctgatcacgacaagtatttgtggaccaacgcgtccttc
gcgtttgccgccaacatggtcaagagctttatcgccaatggttggtgcgtgcagattcgt
gggcctcagtcggggggcgcggtcacggacctgccgatccacttgtatgacctgggtacc
ggcaaccaggtcaagattccttcggaggtgatgatcccggaaacccgcgagttcgaattc
gccaatctcggcttcattcccctgtcgtattacaagaaccgcgactacgcctgtttcttc
tccgccagttcagcccagaagcctgcgttgtacgacacgccggatgccaccgccaacagc
cgcatcaatgcgcgcctgccctatatcttcctgctctcgcgcattgcccattacctgaaa
ttgatccagcgcgaaaacatcgggaccaccaaggaccgtcgcttgctggagttggaactc
aataaatggatcggcgggctggtgaccgaaatgaccgatcccggcgatgccctgcaggcc
tcgcaccccctgcgtgatgccaaggtgacggtggaagacatcgaggacaaccctggtttc
ttccgggtcaagttgtacgccgtgccgcactttcaggtggagggcatggacgtcaacctg
tcgctggtttcgcaaatgcccaaggcgaaagcctga
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