Pseudomonas alvandae B21-020: LOY40_17020
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Entry
LOY40_17020 CDS
T08625
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcas
Pseudomonas alvandae B21-020
Pathway
pcas02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LOY40_17020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcas03021
]
LOY40_17020
Transcription machinery [BR:
pcas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LOY40_17020
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
HTH_23
Sigma70_r4
PhyR_sigma-like
HTH_11
HTH_20
HTH_DeoR
HTH_28
GerE
HTH_31
HTH_IclR
HTH_24
HTH_40
DUF6362
HTH_10
Motif
Other DBs
NCBI-ProteinID:
UVM75441
LinkDB
All DBs
Position
complement(3825040..3825555)
Genome browser
AA seq
171 aa
AA seq
DB search
MRSDETLGTADLGLLYRTHHSWLQGWLIRRIGCRDNAADLAQDTFVRLLKSRQSSPLREP
RAYLSSIARGLMIDQYRRRELERAYLESITLLPQHEVPSEERRLLILDALERIDRMLDML
KPRVRQAFLFARLDGLTCAQIAEKLGVSSATVERDLAIALQHCYRLRYVEA
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagcgatgaaacactaggtactgcagatctagggctgctctatcgcacccaccac
tcgtggttacaaggttggctgatccgacgcattggatgtcgcgataacgcagcagatttg
gcgcaggacacctttgtacgtctgctcaaatcccgtcagtccagccccttgcgtgaacca
cgcgcctatttgagcagtatcgcccgcggactgatgattgatcagtatcgtcgtcgcgaa
ctcgaacgtgcctacttggaaagcatcacgttgctgcctcaacacgaggttccctcggaa
gagcgccgactgctgattcttgatgcgcttgagcgcatagaccgcatgctcgatatgctt
aagccgagagttcgccaagcgtttttatttgcccggctcgacggtttgacctgcgcgcaa
atagccgaaaagctgggtgtttccagtgcgacggtggaacgcgacctggccatagccctg
caacactgctatcgcttgcgttatgtcgaggcgtga
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integrated database retrieval system
