Pseudomonas alvandae B21-020: LOY40_20145
Help
Entry
LOY40_20145 CDS
T08625
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcas
Pseudomonas alvandae B21-020
Pathway
pcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOY40_20145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcas03019
]
LOY40_20145
03009 Ribosome biogenesis [BR:
pcas03009
]
LOY40_20145
Enzymes [BR:
pcas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOY40_20145
Messenger RNA biogenesis [BR:
pcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOY40_20145
Ribosome biogenesis [BR:
pcas03009
]
Prokaryotic type
rRNA helicases
LOY40_20145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
UVM70883
LinkDB
All DBs
Position
complement(4518625..4520298)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERSGDRPDRGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatt
ctcgccggtcacgatatgattggtcaggcgcaaaccggtacgggtaagaccgccgcgttc
gcactgccgatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaactcgtgagttggcgctacaagttgcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtgactgttgtggctgtctacggcggcgcgccgatgggcccacagctgaaa
gcaatccgtaatggcgcacaaatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtcctcgccaccgtgaaccacctggttctcgacgaagcggacgaa
atgctcaagctgggcttcatggacgacctggaagtcatcttcaaggccatgcctgagacc
cgccagactgtcctgttctcggccaccttgccacaatcgatccgtgccatcgccgaacgc
cacctgcgcgatccgaagcacgtgaagatccagagcaagacccagaccgtcaccgcgatc
gagcaggctcacctgctggttcacgccgaccagaagacctccgctgtcctgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgtaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtcatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgttgctgcccgtggcctggacgttccgcgcatcacccacgtgttcaacgtg
gacatgccgtacgatccggaatcctacgtgcaccgtatcggccgtactggccgcgccggt
cgcgaaggtcgcgcgctgttgctggttaccccgcgtgagcgccgcatgctgcaagtgatc
gagcgcgtgactggccagaaggtggctgaagttcgcctgccggacgcccaggctgttctc
gatgcgcgcatcaagaaactgaccaacagcctgtcgccgctggtggctgacgccgaatcg
acccacggtgatctgctcgatcgcctgaccgccgacatcggttgcaccccgcgtgccctg
gccgctgcccttctgcgcaaggccaccaacggccaagcgctgaacctggctgcgatcgag
aaggaacgtccgctggtgccgaacaacgcaccgcgtggcgaccgtcctgagcgcagtggc
gatcgtccggaccgtggtgatcgcgagcgtcgtgcaccgatcccgttggccgaaggccgt
gcccgttgccgtaccgcgttgggcgctcgtgacggcattgccgccaagaacctgctcggc
gcgatcctcaacgaaggcggcctggcccgcgaagctatcggtcgcatccaggtgcgtgac
agcttcagcctggtggaattgccggaagatggtctggagaagttgctgaccaagctcaag
gacacccgcgtggccggcaagcagctcaagctgcgtcgctaccgcgaggattga
DBGET
integrated database retrieval system
