Pseudomonas alvandae B21-020: LOY40_21150
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Entry
LOY40_21150 CDS
T08625
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcas
Pseudomonas alvandae B21-020
Pathway
pcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOY40_21150 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcas03019
]
LOY40_21150 (recQ)
03400 DNA repair and recombination proteins [BR:
pcas03400
]
LOY40_21150 (recQ)
Enzymes [BR:
pcas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOY40_21150 (recQ)
Messenger RNA biogenesis [BR:
pcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOY40_21150 (recQ)
DNA repair and recombination proteins [BR:
pcas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOY40_21150 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
Sigma70_r4_2
HTH_23
GerE
Motif
Other DBs
NCBI-ProteinID:
UVM71074
LinkDB
All DBs
Position
complement(4734182..4736308)
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRT
REEIVDRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKK
VEEVAAFLSEQGFPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVETWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDNEKVRSFGHQHLSVFGVGKARSESEWRSLFRQLVARGLADIDLE
GYGGLRLSATCRPLLKGEVTLELRRDLKPATAVKSSKSQASQLVRGEERDQWEALRALRR
KLAEEHGVPPYVIFPDSTLLEMLRSQPTSLAEMARVSGVGARKLERYGEAFLQVLGGEAE
TPPAVADVRHELITLARAGMTPLQIASQLQCSEKNVYTMLAEAIGQQQLSLEQALDLPEE
LMGEVQDAFLDGEGELPPVSEVAALFAGRVPEGVLYCVRAALQSEFEV
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgttctcaaggacatcttcggctacgacagtttccgtggc
cgccagggtgccattattgagcgcgtggccagcggtggcgatgccctggtgctcatgccc
accggcggcggcaagtcgctgtgcttccaggtgccggccctgttgcgcaacggcctggcg
gtggtggtttcgccgctgatcgccttgatggacgaccaggtcgccacccttgaagaattg
ggtgtcgccgctgcggcgctgaactccaccttgagcgccgagcagcaacgggacctggcc
gcgaggatcaagcgtggcgaggtaaaaatgctctacctggcgccggaacgcctggtgcag
ccacgcatgctggcgtttttgcagagcctggaaatcgccctgtttgccatcgacgaagcc
cactgcgtgtcccaatggggccatgatttccgtcgtgaatacctgcaattggggcagttg
gcggaattgttccccgacgtcccgcgtatcgccctgaccgccacggccgacaagcgtacc
cgcgaggaaatcgtcgaccggctgcatttgcagaatgccgagcggttcctctccagtttt
gaccgtccgaacattttctaccgcatcgtgcccaaggagcagccgcgcaagcagttgctg
gcgttccttgccgagcgacgcagcgacgcgggcattgtctattgcctgtcgcgcaagaag
gtcgaggaagtggccgcgttcctcagcgaacagggttttccggcgttgccctatcacgcc
ggcctgcccaacgatttgcgggcctatcaccagaagcgcttcctcaacgaggaaggcctg
atcatggtggccaccgtggcgttcggcatgggcatcgacaagcccaacgtgcgtttcgtc
gctcacctggacttgcccaagtccctggaagcctattaccaggaaaccgggcgtgccggt
cgtgacggcttgccagccgatgcctggatggcctacggcctgcaagacgtggtgatgctc
aagcagatgttgcagaactccgagggcgatgagcggcacaagcgcctggagcagcacaag
ctcgacgccatgctgtcgctgtgcgaagagacccgctgccgtcgccagaccttgctggcc
tatttcgacgaagacatgccccagccctgcggccattgcgacaattgcgtcgatggcgtg
gaaacctgggacgccacggagccggcccgccaggcgttgtcggcgatttatcgcacgggc
cagcgctacggcgtcgggcatctggtggatgtgttgctgggcaaggacaacgagaaagtc
cgcagctttggccaccagcacctgtctgtgtttggcgtgggcaaggcccgcagcgagagt
gaatggcgctcgttgttccggcagttggttgcgcgcggcctggcggacatcgacctggaa
ggctacggcggcctgcgcctgagtgcgacgtgccggcccttgctcaagggcgaagtcacc
ctggaactgcgccgcgacctcaagccggcgaccgcggtcaagagcagcaagagccaggcc
agccaattggtgcgcggcgaagagcgtgaccagtgggaagcattgcgcgccctgcgccgc
aagctggccgaggaacacggcgtgccgccgtacgtcatctttcccgattccactttgctg
gaaatgctccgcagccaaccgacctccctggcggaaatggcccgggtcagcggcgttggc
gcacgcaagctggagcgttacggcgaggccttcctccaagtgctgggcggcgaagccgag
accccgccggcggtggccgacgttcgccatgaactcatcaccctggcgcgggccggcatg
accccgctgcagattgccagtcaattgcagtgctcggaaaagaacgtctacacgatgctg
gccgaggccattggtcaacaacagctttcgttggagcaagcgctggacctgcctgaagaa
ctgatgggcgaggtccaggatgcgtttctcgatggcgaaggcgagctgcctcccgtatcg
gaagtcgccgcgttgttcgcagggcgggttccggaaggggtcctgtattgcgtcagggcc
gcactgcagtcggaattcgaagtctga
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