Pseudomonas alvandae B21-020: LOY40_21320
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Entry
LOY40_21320 CDS
T08625
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pcas
Pseudomonas alvandae B21-020
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcas03009
]
LOY40_21320
Enzymes [BR:
pcas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOY40_21320
Ribosome biogenesis [BR:
pcas03009
]
Prokaryotic type
rRNA helicases
LOY40_21320
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Microtub_bd
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UVM71105
LinkDB
All DBs
Position
complement(4783880..4785226)
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AA seq
448 aa
AA seq
DB search
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECVNRQQTM
LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIVNWLLAN
ETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVDGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKVDGKGDKKKTGAKAPTKRKTANR
PKTDAPSLVSKDGMAPLKRRKPEAPAAE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagcttaaattt
gtcgagccaacgccggtgcaggcagcggctattccgctcgcgctccaagggcgtgacctg
cgggtgacggcgcaaaccggcagcggcaagaccgccgcgttcgtgttgccgatcctcaac
cgcctgatcggcccggccaagatccgcgtcagcatcaagaccctgatcctgctgccgacc
cgtgaactggcccagcagaccttgaaggaagtggagcgcttctcgcagttcaccttcatc
aagtccggcctgatcactggcggcgaagacttcaaggtccaggccgccatgctgcgcaag
gtgccggacatcctgatcggcacgccggggcggatgatcgagcaattgaacgccggcaac
ctcgacctcaaggaagtcgaagtgctggtgctggacgaagccgaccgcatgctggacatg
ggctttgccgaagacgtgcagcgcctggtggacgaatgcgtcaatcgccagcagaccatg
ctgttctctgccaccaccggcggttcgggcttgcgcgagatgatcgccaaggtgctgaat
aaccctgagcatttgcagctcaacgcggtcagccaactgaactccaccacccgccagcag
atcatcaccgctgaccacaatcagcacaaagagcaaatcgtgaactggttgctggccaac
gagacctacgaaaaagccatcgtcttcaccaacacccgggccatggccgaccgcatctac
ggtcgcctcgttgcccaggaatacaaggcgttcgtgctgcacggcgagaaagaccagaag
gaccgcaagctggccatcgaccgcctcaagcagggcggcgtgaaaattctcgtcgccacc
gatgttgctgcccgtggcctggacgtggatggcctggacatggtcatcaacttcgacatg
ccccgcagcggcgatgaatacgtgcaccgcatcggtcgtaccggtcgtgccggcaacgac
ggtctggcgatctcgctgatctgccacggcgactggaacctgatgtcgagcatcgagcgc
tacctcaagcagagcttcgagcgccgcaccatcaaggaagtcaaaggcacctacggcgga
ccgaaaaaggtcaaggcgtcgggcaaggccgttggcgtgaagaagaaaaaggtcgacggc
aagggcgacaagaaaaaaaccggcgccaaggccccgaccaagcgcaagaccgccaaccgc
ccgaagaccgacgccccgtcgctggtcagcaaggacggcatggccccgctcaagcgccgc
aagccagaggcgccggcggctgagtga
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