Pseudomonas alvandae B21-020: LOY40_22695
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Entry
LOY40_22695 CDS
T08625
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pcas
Pseudomonas alvandae B21-020
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcas03009
]
LOY40_22695 (rimO)
Enzymes [BR:
pcas01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
LOY40_22695 (rimO)
Ribosome biogenesis [BR:
pcas03009
]
Prokaryotic type
ribosomal protein modification factors
LOY40_22695 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
YajR_YAM
Matrix_Paramyxo_N
Motif
Other DBs
NCBI-ProteinID:
UVM71362
LinkDB
All DBs
Position
5072909..5074249
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AA seq
446 aa
AA seq
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MSTTTAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDS
AKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRDVHPSVLSVTGPQQYEQVVNAVHEVVP
PRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AQRLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPD
LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLNLDVVPDDVK
QDRWERFMAHQQAISSARLQMRIGREIEVLVDEVDEQGAVGRCFFDAPEIDGNVFIDNGS
NLKPGDKVWCKVTDADEYDLWAEQIG
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccactaccgcgccagccaacccgaaggttggcttcgtatccctgggttgcccg
aaggctctggtcgactccgagcgcatcctgacccaactgcgcatggaaggttatgacgtc
gtgtccacttaccaggacgctgacgtggtagtggtcaacacctgtggcttcatcgactcg
gccaaggccgaatcccttgaagtgatcggcgaggccatcaaggaaaacggcaaggtcatt
gtcaccggctgcatgggcgtggaagaaggcaacatccgcgacgtgcacccgagcgtgttg
tcggtgaccgggccgcagcagtacgaacaagtggtcaatgccgtgcacgaagtcgtgccg
ccgcgccaggaccacaatccgctgatcgacctggtgccgccgcaaggcatcaagctgacc
ccgcgtcactacgcctacctgaagatttccgaaggctgcaaccacagctgcagtttctgc
atcatcccgtcgatgcgcggcaagctggtgagccgtccggtgggtgatgtgctcgacgag
gcacagcgcctggtcaaggccggcgtcaaggaactgctggtgatttcccaggacaccagc
gcctacggcgtcgacgtcaagtaccgtaccggcttctggaacggcgcgccggtgaaaacc
cgcatgaccgagctgtgcgaagccctgagcacacttggcgtctgggtccgcctgcattac
gtctacccgtacccgcacgtcgatgagctgatcccgctgatggccgccggcaagatcctg
ccgtacctggacatcccgttccagcacgccagcccgaaagtcctcaaggccatgaagcgc
ccggctttcgaagacaagaccctggcccgcatcaagaactggcgcgaaatctgcccggac
ctgatcatccgctcgaccttcatcgtcggcttcccgggcgaaaccgaagaagacttccag
tacctgctggactggctgaccgaagcccagctcgaccgcgtcggctgcttccagtactcc
cctgtcgaaggcgcaccggccaatgacctgaacctggacgtggtgccggacgacgtcaag
caagaccgttgggagcgcttcatggcgcaccagcaggccatcagctcggcacgcctgcag
atgcgcatcggccgtgaaatcgaagtgctggtggacgaagtcgacgaacaaggcgccgtg
ggccgctgcttcttcgacgctccggaaatcgacggcaacgtgttcatcgacaacggcagt
aacctgaagccgggcgacaaggtctggtgcaaggtcaccgacgccgatgagtatgatttg
tgggctgagcagatcggttga
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