Pseudomonas alvandae B21-020: LOY40_25075
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Entry
LOY40_25075 CDS
T08625
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcas
Pseudomonas alvandae B21-020
Pathway
pcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOY40_25075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcas03019
]
LOY40_25075
Enzymes [BR:
pcas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOY40_25075
Messenger RNA biogenesis [BR:
pcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOY40_25075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UVM71807
LinkDB
All DBs
Position
complement(5569256..5570593)
Genome browser
AA seq
445 aa
AA seq
DB search
MTFATLGLIEPLLRALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLL
QLLTTEGPKVAANSVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMK
LRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKR
QTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFIHLMR
KHKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKASEVQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEVNLLSAIE
TLTRQTLPRQMEQDFEPEHRVPETDASGQVIKKPKKPKKPKTQGSGGKRNLGKWVDSGDS
GPVEPSVKPVRKVPVFNTGPRKRKP
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgccacccttggcctgatcgaacccctgctgcgcgccctcgagacgctcggc
taccagactccgacgccggtccaggcccaagccatgccggccgtgctcgccgggcgcgac
ctgatggccgcggcccagaccggtactggcaagaccgccggtttcgccgtgccgctgttg
cagttgctgaccaccgaagggccgaaagtcgccgccaactcggtgcgtgcgttgatcctg
gtgccgacccgcgagctggccgagcaggtccacgaaagcgtgcgccaatacgcgcagaac
ctgcccttgagcacctacgccgtgtacggcggcgtcagcatcaacccgcagatgatgaag
ttgcgcaaaggcgtcgacttgctggtggcgacgccgggccgcttgctcgacctgttccgc
cagaacgcgctgaagttcaaccagttgcagaccctggtgctggacgaagccgaccgcatg
ctcgacctggggttctccgaggaactggcgaacatctacaaggcgctgccgaagaagcgc
cagacgctgctgttctcggcgaccttttccgatgcgatccgcctgttggccgggcagatg
ctcaacgatccgctgagcatcgaagtgagcccgcgcaacgtggccgccaacaccgtcaag
caatgggtggtgacggtggacaagaagcgcaagccggagctgttcattcatctgatgcgc
aagcacaagtggaaacaggtgctggtgttcgccaagacccgcaacggcgtcgatgcgctg
gtggaaaaactccagggcctcggtgtcaatgccgatggcatccacggtgacaagccccag
gcgacccgccagcgcgcgctggatcgcttcaaggccagcgaagtgcagatcctggtggcc
accgacgtcgccgcccgtggcctggatatcgaggatttgccattggtggtgaacttcgac
ctgccgatcgtcgccgaggactacatccaccgcatcggccgcacgggccgggcgggcgcc
accgggcaggcgatttccctggtctgcgccgatgaagtgaatctgctgtcggccatcgag
accttgacccgtcagacactgccccggcagatggaacaggatttcgaacctgagcaccgt
gtgccggagaccgatgccagcggccaggtgatcaagaaaccgaagaagccgaagaaaccg
aaaacccagggcagtggcggcaagcgcaacctgggcaagtgggtggacagtggcgattcg
gggccggtggagccgtcagtcaagccggtgcgaaaagtgccggtgttcaataccgggccg
cgtaagcgtaagccttga
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