Pseudomonas alvandae B21-020: LOY40_25250
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Entry
LOY40_25250 CDS
T08625
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
pcas
Pseudomonas alvandae B21-020
Pathway
pcas03030
DNA replication
pcas03430
Mismatch repair
pcas03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOY40_25250 (holA)
03430 Mismatch repair
LOY40_25250 (holA)
03440 Homologous recombination
LOY40_25250 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcas03032
]
LOY40_25250 (holA)
03400 DNA repair and recombination proteins [BR:
pcas03400
]
LOY40_25250 (holA)
Enzymes [BR:
pcas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LOY40_25250 (holA)
DNA replication proteins [BR:
pcas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LOY40_25250 (holA)
DNA repair and recombination proteins [BR:
pcas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LOY40_25250 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
HP_1247_M
DNA_pol3_gamma3
CCCAP
Motif
Other DBs
NCBI-ProteinID:
UVM71841
LinkDB
All DBs
Position
5607398..5608435
Genome browser
AA seq
345 aa
AA seq
DB search
MKLAPAQLGKHLQGALAPVYIISGDDPLLCQEAADAIRSAARQQGFDERQVFAADASFDW
GTLLQAGASMSLFAEKRLLELRLPSGKPGDKGAAALIEYCSRPAEDTVLLISLPKLDGSA
QKTKWGKALVEGPQTQFVQIWPVDVSQLPSWIRQRLSQAGLSASQDAVELIAARVEGNLL
AAAQEIEKLKLMAEGGQITVETVQAAVADSARFDVFGLTDAILNGEAAHALRMLEGLRGE
GVEPPVILWALARELRLLANLSLQYSQGVPLDKAFSQACPPVWDKRKPLMSKALQRYSAS
RWAQLLLEAQRIDAQIKGQAAGSPWMSLSRLSLLMAGQRLPLPAE
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgctcccgcgcaactcggcaaacacctgcaaggcgctctcgcgccggtctat
atcatcagcggcgatgacccgctgctgtgccaggaagccgccgacgccatccgctccgcc
gctcgccagcaaggtttcgacgaacgccaggtgttcgccgccgacgccagttttgactgg
ggtacgttgttgcaggccggggcaagcatgtcgctgtttgccgagaaacgcctgctggaa
ctgcgcctgccttccggcaagcccggtgacaaaggtgccgccgcgctgatcgaatattgc
tcgcgcccggccgaagacacggtgctgctcatcagcctgccgaaactcgacggcagtgcg
cagaaaaccaagtggggcaaggccctggtcgaagggccgcagacccagttcgtgcagatc
tggccggtggatgtcagccagttgccgagctggatccgccagcgcctgtcccaggccggg
ctgtcggccagccaggacgcggtggaattgatcgccgcccgggtcgaaggcaacctgctg
gccgccgcccaggaaatcgaaaagctcaagctgatggccgaaggcgggcagatcaccgtg
gaaacggtccaggccgccgtagccgacagcgcccgcttcgacgtcttcgggctgaccgat
gcgatcctcaacggcgaagccgcccatgccttgcgcatgctcgaaggcctgcggggcgaa
ggcgtcgagccaccggtgatcctctgggccctggcccgggagctgcggctgctggccaac
ctgtcgctgcaatacagccagggcgtgcccctggacaaggccttcagccaggcctgtccg
cccgtgtgggataaacgcaaaccgctgatgagcaaagccctgcagcggtactcggcgtca
cgctgggcacaactgctgctggaagcccagcgcatcgatgcgcagatcaagggccaggct
gccggctcgccgtggatgagcctcagtcggttgtcgttgttgatggccggccagcggttg
ccactgccagctgaataa
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