Pseudomonas alvandae B21-020: LOY40_25800 Help Entry LOY40_25800       CDS       T08625                                  Name (GenBank) DEAD/DEAH box helicase   KO K03724   ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] Organism pcas  Pseudomonas alvandae B21-020 Brite KEGG Orthology (KO) [BR:pcas00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:pcas03400]     LOY40_25800 Enzymes [BR:pcas01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.4  DNA 3'-5' helicase      LOY40_25800     5.6.2.6  RNA 3'-5' helicase      LOY40_25800 DNA repair and recombination proteins [BR:pcas03400]  Prokaryotic type   Other factors with a suspected DNA repair function    DNA helicases     LOY40_25800 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DEAD_assoc DEAD WHD_4th_Lhr WHD_Lhr WHD_3rd_Lhr Helicase_C ResIII Cas3-like_C_2 MarR HTH_IclR Fe_dep_repress Motif Other DBs NCBI-ProteinID:  UVM71947 LinkDB All DBs Position 5721985..5726298 Genome browser AA seq 1437 aa AA seqDB search MNLPLAADHAMAGFHPAVRAWFSQTFPAVTAAQARAWPLIGQRRSVLVAAPTGSGKTLTA FLAVLDDLVHRGLEQGGLPDATLVVYVSPLKALSNDIQINLQNPLAGITEQLQRMGLPPL PITTAVRTGDTPQKERSAMRKTAPHILVTTPESLYVLLGSDSGRQMLASTRTVIVDEIHA IAASKRGSHLALSLERLQALCAEPLMRIGLSATQKPIEAVSRFLVGEGRTCEIVDIGHAR PRDLDIEVPPVPLSAVMANDVWDLVYNRLAELARAHRTTLVFVNTRRLAERLSRHLSERL GKDAVAAHHGSLAKEFRLDAEQRLKRGELQVLIATASLELGIDIGDVDLVCQIASPRSIS AFLQRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDILHIPRAPLDVLAQQ IVAEVSCQEWHEQALLEMFRRASPYAELDEAHYQALLQMLAEGLNGRQGVRSAYLHRDAV TRTLRGRRGSKLTAVTSGGTIPDNADYSVLLEPQGLNIGSVNEDFAVESIAGDVFQLGNT SYRIIRVETGRVRVEDAQGQPPTIPFWLGEAPGRSAELSQAVARLQAQLDQLLGATPGNL QPALDWLTGTLHLNLASADQILDYLAPARLAFGALPSQDTLVMERFFDESGGTQLIIHTP FGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSQSAEQ ILIQAVLDAPLFGVRWRWNAGVALALPRYTGGRKVAPQIQRMKSEDLIASVFPDQIACLE NLAGEREIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMEAGEISLVSRDLPAPSPLAAEI LSARPYAFLDDAPLEERRTQAVINRRWSDPQSTDDLGALDAEAIQAVREEAWPTPTNVDE IHEALMSLACIADREASAEPSWLDGLRTLAERGRASHIQISDERGLWVPLERLTCLQAIY PQAQWQPPLMPLPGFDEPWDSDEAVVEVLRARLSAFGPQPLTAIAYPLGLSPAQATQALA QLEQQGYVLRGRFTPGTAQEEWCERHLLARIHRYTVKRLRREIEPVMLQDFMRFLFDWQH LSPSSQGRGNAVLPSIIGQFEGYPAAASAWDSDLLPARIKDYSPSWLDELCRSGKFVWTR LSARQKLSASALRSTPIVLLPRAKVALWSSLAEQTPISELSLKTQKVHQALSEHGALFFD ELLHEAHLLRSELEIALQELVGAGLVNADSFAGLRALITPASKRQARSSRRGRGAFVGGM DDAGRWALLRRSSPAPEPGNRPAPTPPDTLEHIALTLLRRYGVVFWRLLEREADWLPSWR ELLRTFHRLEARGEIRGGRFVSGLAGEQFALPEAIPLLREARRRPTDGSLVAVCGVDPLN LAGTLLPGAKVPALASNRLVYRDGLPVAALVAGKQQLFVELDAEGMAGVRNKLIQKN NT seq 4314 nt NT seq  +upstreamnt  +downstreamnt atgaatctgccccttgcagccgaccacgccatggcaggctttcaccccgccgttcgcgcc tggttcagccagacattcccggcggtcacggccgcccaggcccgggcgtggccgttgatc ggccagcgccgttcggtgctggtcgccgcgccaacgggttcgggcaagaccctgaccgca tttctcgcagtgctggatgacctggtgcaccgcggcctggagcaaggtggcctgccggac gcgacgctggtggtctacgtctcgccgctcaaggccctgagcaacgacatccagatcaac ctgcagaatcccctggccggtatcaccgagcagttgcagcgaatgggcctgccgcccttg cccatcaccaccgccgtgcgcaccggtgacaccccgcaaaaagaacgctcggcgatgcgc aagaccgcgccgcacatcctcgtgaccacccccgaatcgctctatgtgctgctcggctcc gattccggccggcagatgctcgccagcacccgcacggtgatcgtcgacgaaatccacgcc atcgccgccagcaagcgcggcagccacctggccttgagcctggaacggctgcaagcgctg tgcgccgaaccgctgatgcgcatcggcttgtccgccacgcaaaaacccatcgaagcggtg tcacgctttctggtcggcgaaggacgcacctgcgaaatcgtcgacatcggccacgcccgc ccgcgggacttggacatcgaggtgccgccggtgccgctttctgcggtgatggccaatgac gtctgggatctggtctacaaccgcctcgccgagctggcccgggcgcaccgaaccacgctg gtgttcgtcaacacgcggcggctggccgaacgcctgagtcgtcacttgagcgaacgcctg ggcaaggacgccgtggcggcccaccacggcagcctggccaaggagtttcgcctcgacgcc gagcaacgcctcaagcgcggtgaattgcaggtgctgattgccacggcgtcgctggagctg ggcatcgacattggcgatgtcgacctggtctgccagatcgcctcgccccgttcgatctcg gcgttcctgcaaagggttggccgctccggccaccaggtcggcggcacgcccaaggggcgc ctgttcgccaccacccgcgacgacttgatcgaatgcgccgccctgctcgactgcgtgcgc cgtggcgagctggacatcctgcacatccccagggcgccgctggacgtcctggcccagcag atcgtcgccgaagtcagttgccaggaatggcatgaacaggcgttgctggaaatgttccgc cgcgcctcgccctacgcggagctggacgaagcccactaccaggccttgctgcaaatgctc gccgagggactcaatggccgacaaggcgtgcgcagcgcctacctgcaccgcgacgccgtg acccggaccttgcgcgggcgccggggcagcaaactgacggcggtgaccagcggcggcact atcccggacaacgctgactacagcgtgctgctcgaaccacaggggttgaacatcggcagc gtcaatgaagacttcgccgtggagagcatcgccggcgatgtgttccagctgggcaatacg tcctatcgcatcatccgcgtcgagaccggccgcgtgcgggtcgaggacgcccagggtcaa ccaccgaccatcccgttctggctcggcgaagccccggggcgcagcgccgagttgtctcag gccgtcgcccgcctgcaagcccagctcgatcaactgctcggcgccacgccgggtaatctg caaccggcactcgactggctgaccggcaccttgcacctgaaccttgccagcgccgatcag atcctcgattacctcgccccggcacgcctggccttcggcgccctgccgtcccaggacacc ttggtgatggaacggtttttcgacgagtccggcggcacgcaactgatcatccatacgccc ttcggcagccgcatcaaccgcgcctggggcctggccctgcgtaagcgtttctgccgcacc ttcaacttcgagttgcaggccgccgccagcgaggacgccatcgtgttgtcgctgtccacc agccacagcttcgaactggacgaggtctggcgctacctcaacagccagagcgccgagcaa atcctgattcaagctgtattggatgcgccgctgttcggcgtgcgctggcgctggaatgcc ggcgtggccctggcgttgccgcgctataccggcgggcgcaaagtcgcgccgcagatccag cgcatgaaaagtgaggacttgatcgccagcgtgttcccggaccagatcgcctgcctggaa aacctcgccggcgagcgagagattcccgatcatccgctggtggagcaaaccctggacgat tgcctgcacgaggcgatggacagcgaaggctggctggcgctgttgcggcgcatggaagcg ggtgagatcagcctggtcagccgcgacctgccggcgccctcgcccctggcggcagaaatc ctcagcgcccggccttacgccttccttgacgacgcgccgctggaggagcgccgtacccaa gcggtgatcaaccgccgctggagcgatccgcaatccaccgacgacctcggtgcgctggac gccgaggccatccaggccgtgcgggaagaggcctggccgacgccgaccaatgtcgatgaa atccacgaagcgctgatgagcctggcctgcatcgccgacagagaagccagtgccgagccg tcttggctggacgggctgcggaccctggcggagcgcggtcgcgccagtcacattcagatc agtgacgagcgcggcctgtgggtgccgctggagcggctgacgtgcctgcaggcgatttat ccacaagcccaatggcagccgccgctgatgccgctgccggggttcgatgagccgtgggac agcgacgaggccgtggtggaagtgctgcgcgcgcggctcagtgcctttggcccgcagccg ttgacggcgatcgcctacccgctggggctgtcgccggcgcaagcgacccaggccctggct cagctcgaacaacaggggtatgtgctgcgcggtcgcttcactccgggcaccgctcaagag gagtggtgcgaacggcatctgctggcgcggatccaccgctacacggtcaagcgcttgcgc cgggaaatcgagccggtgatgttgcaggatttcatgcgtttcctgttcgactggcagcat ctgtcgccgtccagccagggccgcggcaacgcggtgctgccgtcgatcatcggccagttc gaaggctacccggccgccgcctcggcctgggacagcgaccttttgccagcgcgaatcaag gattattcgccgagctggctcgacgaactgtgccgcagcggcaagttcgtctggacgcgc ctgagcgcccgccagaagttatctgccagcgccctgcgcagcacaccgatcgtgttgttg ccgcgtgccaaggtcgcgctgtggagcagcctggccgagcagacaccgatcagcgaactg tcgctcaagacgcaaaaagtccatcaagccctcagtgaacatggcgcgttgtttttcgat gaattgctgcacgaggcccatttgctgcgcagcgaactggaaatcgccttgcaggaactg gtcggtgccgggctcgtgaatgctgacagcttcgccgggctgcgggccttgatcacccct gccagcaaacgccaggcccgtagcagccggcgcggacgcggggcgtttgtcggcggcatg gacgatgccgggcgctgggccttattgcgccgcagttcgcccgcgccagaacccggcaac cggcccgcgcccacaccgcccgataccctggaacacatcgccctgaccctgttgcgccgt tatggcgtggtgttctggcgcctgctggagcgcgaggccgattggctgccgagctggcgt gaattgctgcgcacgtttcatcgtctggaggcacggggcgagattcgaggcgggcgcttc gtcagcgggctggccggcgaacaattcgccttgcccgaagccatcccgctgctgcgcgaa gcacggcgtcggcccaccgatggcagcctggtggcggtgtgcggggttgatccgttgaac ttggccggcacgttgttgcccggggcgaaagtgccggcgctggcgagtaatcggctggtg tatcgggatgggttgccggtggcggcgctggtggcgggcaagcagcagctatttgtggag ttggatgcagaagggatggctggggtcaggaacaagctcattcagaaaaattga

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