Pseudomonas alvandae B21-020: LOY40_26050
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Entry
LOY40_26050 CDS
T08625
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcas
Pseudomonas alvandae B21-020
Pathway
pcas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOY40_26050 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcas03021
]
LOY40_26050 (rpoC)
03400 DNA repair and recombination proteins [BR:
pcas03400
]
LOY40_26050 (rpoC)
Enzymes [BR:
pcas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOY40_26050 (rpoC)
Transcription machinery [BR:
pcas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOY40_26050 (rpoC)
DNA repair and recombination proteins [BR:
pcas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOY40_26050 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UVM71997
LinkDB
All DBs
Position
complement(5767732..5771931)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGNSVTNTRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGNEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGARIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLATEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacccgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgcggcgtgatctgcgagaagtgcggcgttgaagtcgcgctggcaaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccagttgctcacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaagggccagctgctg
aatgacgaacagtacttcgaagcgctggaagagttcggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgcgatcgacctggagcacgagattggtcgt
ctgcgcgaagagattccgcaaaccaactccgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccactggttccgctcgatggcggtcgcttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgtctgctcgacctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagcggtcgacgcactgctcgacaacggtcgtcgtggccgggctatcaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcatcagtgcggcctgcccaagaaaatggcgctggagctgttcaagccgttc
atcttcggcaagctggaaatgcgtggtcttgcgaccaccatcaaagccgccaagaaaatg
gtcgagcgcgaactgccagaggtctgggacgttctcgccgaagtgattcgcgaacaccca
gtgctgctcaaccgtgcaccgacccttcaccgtctgggcatccaggcgtttgaaccggta
ctgatcgaaggcaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccagatggccgtgcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcccaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggatctgcaggaagtcgaccgtgtgttccgtgctggc
gaagccgcactgcacgccaagatcaaggtgcggatcaatgaaaccgtaaacgatcgtgat
ggcaacagcgtgaccaacactcgcatcgtcgacaccactgtcggtcgtgcgctgttgttc
caggttgtgccaaaaggcttgtcgttcgatgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtgatcttc
gccgaccagttgatgtacaccggttttgcctattcgaccatctccggcgtttccatcggt
gttaacgacttcgttatccctgatgaaaaagcccgcatcatcggtgctgccaccgaagaa
gtgaaagagatcgaaagccagtacgcgtccggcctggtaacccagggcgagaagtacaac
aaggtaatcgacctctggtccaaggcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgccacggcaacgaagttgaccaggaatcgttcaac
tcgatgtacatgatggccgactcgggtgcgcggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgagacgccgattact
gcgaacttccgtgaaggtttgagcgtactccagtacttcatctccactcacggtgctcgt
aagggtctcgcggataccgcgttgaaaaccgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaagacttggtcgtgaccgagatcgattgcggcaccgagcacggcctg
gtcatgacgccgcacattgaaggcggtgacgttgtagagccgttgggtgagcgcgtattg
ggtcgtgtcattgcccgtgacgtattcaagccaggtaccgaggacgtcatcgttcctgcc
ggcaccctggttgacgaaaagtgggtcgaattcatcgagctcaacagcatcgacgaagtg
atcgtgcgttcgccaatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttattgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gcaagccggacctccgcagccgacagcgtccaggtgaagaatggcggtaccgtccgcctg
cacaacctgaagcacgttgagcgagtggacggccacctggtggctgtgtcccgttccggt
gagctggcaattgccgacgacttcggtcgtgagcgcgagcgctacaagctgccgtacggt
gctgtgatttcggtgaaggaaggtgacaaggtcgacgctggtgccatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgagatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacatcgaa
gtactcgacgcaaaagatcgtccagctgcgggcaaggacatccgtccagccgtgaagatg
gtcgacgacaacggcaaggatctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtggcggacggtgcgcggatcgcgatcggtgacgta
atcgctcgtatcccgcaggaaacctcgaaaacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagcccgtcgtccgaaagaagcctcgatcctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgccgcctggttatcaccccgaac
gacggtagcgacccgtacgaagagttgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtgaacgagatccaggacgtt
tatcgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgagatcgctgaatccggcgactcgagtttcatcaagggcgaccagatg
gaactgactcacgtgctggtggaaaacgagcgtctggcgacggaagacaagttcgtctcc
aagttcactcgcgtgctgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccactcgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtttggcttatcacagcgagcgcaagcgtcgccgtgatgcagacaagccgttgcgc
gtaagcgccagtgaagtggaagcggcactgaccgaagcactgaactcgagcggtaactga
DBGET
integrated database retrieval system
