Pseudomonas canavaninivorans: LOY40_26675
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Entry
LOY40_26675 CDS
T08625
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcas
Pseudomonas canavaninivorans
Pathway
pcas02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LOY40_26675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcas03021
]
LOY40_26675
Transcription machinery [BR:
pcas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LOY40_26675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
Sigma70_ECF
HTH_24
HTH_17
Sigma70_r3
Peripla_BP_3
MerR
FaeA
HTH_31
Motif
Other DBs
NCBI-ProteinID:
UVM72109
LinkDB
All DBs
Position
5905614..5906132
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AA seq
172 aa
AA seq
DB search
MRPGTTPHSDLVGALYRDHRGWLLAWLRRNVACAQRAEDLSQDTFVRLLGREELKAPREP
RAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPEDEQPSVEEQQLILEDLKNIDRLLGKL
SSKARAAFFYNRLDGLGHAEIAERLGVSVPRVRQYLAQGMRQCYIALYGEPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgagaccgggcactactcctcatagtgatttggttggtgcgttgtaccgtgaccatcgc
ggctggctattggcatggctgcggcgcaacgtggcctgcgcgcagcgggccgaggacctg
agccaggacacgtttgtgcgcttgctgggtcgcgaggaattgaaggcgccccgggaacct
cgtgcattccttgtggcgatcgccaaggggctgttgttcgactacttccgtcgggccgcc
ctcgaacaggcctacctgaccgaactgatgctgattccagaagacgagcaaccatcggta
gaagagcaacaactcatcctcgaagacctcaagaacatagatcgcctgttgggcaagttg
tccagcaaggcccgcgcagccttcttctataaccgcctcgacggcctcggccacgctgaa
atcgccgagcgcctgggggtttcggttccacgggtacggcaatacctggcccaaggcatg
cggcagtgctacatcgcgctttatggtgagccgacatga
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