Pseudomonas alvandae B21-020: LOY40_28000
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Entry
LOY40_28000 CDS
T08625
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcas
Pseudomonas alvandae B21-020
Pathway
pcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOY40_28000 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcas03021
]
LOY40_28000 (rho)
03019 Messenger RNA biogenesis [BR:
pcas03019
]
LOY40_28000 (rho)
Transcription machinery [BR:
pcas03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LOY40_28000 (rho)
Messenger RNA biogenesis [BR:
pcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LOY40_28000 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
UVM72363
LinkDB
All DBs
Position
complement(6189485..6190744)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaag
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttccttcgctccgcagacgcttcctatctcgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttacttcgcgctgctcaaggtcgacacgatcaac
ttcgaccgtccggaaaacgcgaagaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaaaatggaagccggcaacggttccaccgaagacctcaccggtcgt
gtcatcgacctgtgcgcacccatcggcaagggccaacgtggcttgatcgtggcaccgccg
aaagcgggcaagacgatcatgctgcagaacatcgcggccaacatcgcccgtaacaaccct
gaagttcacctgatcgtgctgctgatcgacgaacgtccggaagaagtgaccgagatgcag
cgcaccgtgcgcggtgaagtggtcgcctcgacattcgacgaaccgccgacccgtcacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtgatcctgctggactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtgctgaccggtggtgtcgatgcccatgccctggagaaaccgaagcgtttc
ttcggcgccgcacggaacatcgaggagggcggttcgctgactatcatcgccaccgcgctg
gtcgagaccggctcgaagatggacgaagtgatctacgaagagttcaagggtaccggcaac
atggaactgcccctggaccgtcgcatcgccgagaagcgtgtattcccggccatcaacatc
aaccgttccggcacccgtcgcgaagaattgctgaccgccgatgacgagttgcagcgcatg
tggatcctgcgcaagctgctgcatccaatggatgaagtcgctgccatcgagttcctggtc
gacaagctgaaaacgaccaagaccaacgatgagttcttcctgtcgatgaagcgcaagtaa
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