Parolsenella catena: Pcatena_01230
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Entry
Pcatena_01230 CDS
T05797
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcat
Parolsenella catena
Pathway
pcat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pcatena_01230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcat03019
]
Pcatena_01230
Enzymes [BR:
pcat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pcatena_01230
Messenger RNA biogenesis [BR:
pcat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pcatena_01230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Fe-ADH
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBH49536
UniProt:
A0A3G9K097
LinkDB
All DBs
Position
complement(142718..144388)
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AA seq
556 aa
AA seq
DB search
MTQSTNPGDGTTVAFSDLGLSEAVLKAVETLGYEQPTPVQAQAIPYVLEGRDLLAAAQTG
TGKTAAFLLPTMSRLRHAERHRGPRMLIVTPTRELAQQIADVCATIEGRTHHRSYTVVGG
VGYEPQKAALRRGLDILVATPGRLVDLIEQGEAHLDDVEVLVLDEADRMLDMGFLPAMRK
IVGQTPSSRQTLLFSATLDEDAIGGIRDLVSDPAVVEIAHKGSVAETIDQFALPVSLEAK
NALLPEVLKQEGPKRVIVFCRTKHRADACCRRLRRANISCAPIHGDRSQNQRERALRAFR
DGSCDVLVATDVLARGIDVSDVRYVVNFDVPVDAEDYIHRIGRTGRAGEAGWALTFVTEN
DADELYAAEKLMGKVVPPFEPSYELELGDKPVELNPDRNPEDWRPLGKKARKKREEARKA
ASAAARKRALAKPRAEKSEKLAEHDKPAKTGGAKKDRPSKAAKSQRPGIAKLTRREVAEL
ELETEGERRQRSRGGRRGGRRGGGQGRDGRPQQGGRANGQQTGRDQAADRRQRPAGGRGG
QHRRVGDRAGRQRGIY
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacccagagcaccaaccccggtgacggcacgaccgtcgccttctccgacctcggtctt
tccgaggccgtcctcaaggccgtcgagacgctcggctacgagcagcccacgcccgtccag
gcccaggccatcccctacgtcctcgagggccgtgacctgctcgccgccgcccagaccggc
acgggcaagacggccgccttcctgcttcccacgatgagccgcctcaggcacgccgagcgc
caccgcggccccaggatgctcatcgtgacgcccacgcgcgagcttgcccagcagatcgcc
gacgtctgcgccaccatcgagggccgcacgcatcaccgcagctacaccgtcgtaggcggc
gtgggctacgagccgcagaaggccgcccttcgccgtggccttgacatcctcgttgccacg
cccggccgcctcgttgacctcatcgagcagggcgaggcccacctcgatgacgtcgaggtg
ctcgtgctcgacgaggcagaccgcatgctcgacatgggctttctgcccgccatgcgcaag
atcgtgggccagacgccctcctcgcgccagacgctgctgttctcggccacgctcgacgag
gacgccatcggcggcatccgcgatctcgtgagcgatccggccgtcgtggagatcgcgcac
aagggctcggttgccgagaccatcgaccagtttgcgctgcccgtctcgctcgaggccaag
aacgcgctgctccccgaggtgctcaagcaggagggccccaagcgcgtcatcgtcttctgc
cgcacgaagcaccgcgcggacgcctgctgccgccgcctgcgccgcgccaacatctcctgc
gcccccatccacggcgaccgcagccagaaccagcgcgagcgcgccctgcgcgccttccgc
gacggcagctgtgacgtcctcgttgccaccgacgtcctcgcccgcggcatcgacgtctcc
gacgtgcgctacgtcgtgaacttcgacgtgcccgtggacgccgaggactacatccaccgc
atcgggcgcacgggccgcgcgggcgaggccggctgggcgctcaccttcgtgactgagaac
gacgcagacgagctctacgccgccgagaagctcatgggcaaggtcgtgccgcccttcgag
ccctcctacgaactcgagctgggcgacaagcccgtggagctcaacccggaccggaacccc
gaggactggcgcccgctgggcaagaaggcccgcaagaagcgcgaggaggcccgcaaggcc
gccagcgcggccgcccgcaagcgcgccctcgccaagccccgcgccgagaagagcgagaag
ctcgccgagcacgacaagcccgccaagaccggcggcgcaaagaaggacaggccctccaag
gccgcgaagtcgcagcgcccgggcatcgccaagctcacgcgccgcgaggtcgccgagctc
gagctcgagaccgagggcgagcgcaggcagcgcagccgcggcggcagacgcggcggcagg
cgtggcggtggccagggccgagacgggcgcccgcagcagggcggccgcgcgaacggccag
cagaccggccgcgaccaggccgcggaccgcaggcaacgccccgcgggcggcaggggcggc
cagcaccgccgcgtgggagaccgcgccggccgccagcgcggcatctactag
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