Parolsenella catena: Pcatena_01540
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Entry
Pcatena_01540 CDS
T05797
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcat
Parolsenella catena
Pathway
pcat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pcatena_01540 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcat03400
]
Pcatena_01540 (mfd)
Enzymes [BR:
pcat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pcatena_01540 (mfd)
DNA repair and recombination proteins [BR:
pcat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pcatena_01540 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBH49567
UniProt:
A0A3G9JVV0
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All DBs
Position
183429..186893
Genome browser
AA seq
1154 aa
AA seq
DB search
MLINRVSRQLLGAPELLPALSELRAGNDATVAVSQSARTLVLASVWAQDPRPCLFVVSGE
EAAERAAHALEAWLGKDVVLRYPERRDLPWKSDAPDDAVIGARTEAIGRLATGDACVVVA
SARSLLRRVPPVGSGYWASSTFAVGDEVPFEDVGPLLVGLGYADPGEVDGPGTFHIHGDA
VDVFPAQAATPVRIEFFGDEIDRVRRMVASTGQTIGDLESVTVRPCRELALTDETVAHAR
KALWTAAQNDTKLAADLELIEARSSEPALERYLPALYGKTASPLEHVCADALMCFAEPRA
LFDDCVRGSDEAEQLARNAGVSTKGLFTAPRDMDFGSQQRLSFASMLRVGTQVTSELPIR
QPGISGSDTRLLGRVRQLVGDGFSVLFAVPDRSAREHLELNFGDEHIMFGESLASAAENR
VPLADPKANEPACAPALPRGQVTFIDAAVPAGIVAPTAKLAVLSVGDLSARMAKHRSRRR
VDPTSITFPFKPGDYVVHATHGIALFADIVRQEVGGRERDYFLLEYAGGDKLFVPLEQVD
RITRYVGPDGSSPRLTRLNTADWSRATNKARKNAKRLAFDLVDLYTRRASVQGHAFEPDT
PEQEEMEASFPYALTADQRTAVNDIKADMETARPMDRLLCGDVGFGKTEVALRAAFKCVA
EGRQVMVLCPTTILAQQHFETFFNRFAPFDFEVEVLSRFRTAKQQRLALEGFASGKVSVL
VGTHRLLSSDVNPHDLGLVIVDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAM
SGVRDMSLIMTPPPGRLPVKVTVGEYDPDVVSAAIRTELARKGQVYYVSNRVKTIDEAEA
RVLEAAPEARVGVAHGKMSAKQVEDMMMKFQRGDIDVLVATTIIESGIDNPHTNTLIIED
SQRLGLAQLYQLKGRVGRGRTQAYAYFMFPGERPLTPEATERLTAINEFQELGSGMRVAM
RDLEIRGAGSLMGAEQHGNLSSVGFDLFTQMLGQAVAEARGDAADDLAQSEVNINLPADF
YLAEEYLPEVDRRVLVYRKLACAMELAEVDALQHECEESFGSLPQAACNLFDRTRIRIRA
QRLGVSSVSIASGRIIFQGLKCSRELTLKLKEQRALVYPKTEKVAYPLRRDEAGAVAQAL
SVLELAGGDDDPEE
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
gtgctcatcaatcgagtctcccgtcagctgctcggcgcccccgagctgcttccggctctc
tcagagctgcgcgccggcaacgacgccacggtggccgtctcccagagtgcccgcacgctc
gtgctcgcgagcgtctgggcgcaagacccgcggccgtgcctgttcgtcgtctcgggcgag
gaggccgccgagcgagcggcccacgcgctcgaggcgtggctcggcaaggacgtggtgctt
cgctatcccgagcgccgcgacctgccgtggaagagcgacgcgccggacgacgccgtcatc
ggcgcccgtaccgaggccatcggaaggctcgcgaccggtgacgcgtgcgtcgtcgtggcg
agcgcccgctcgctgctgcgccgcgtgccgcccgtgggctcgggctactgggcgagctcg
acgtttgccgtgggcgacgaggtgcccttcgaggacgtgggtcccctgctcgtgggcctg
ggatatgcggacccgggcgaggtcgacgggccgggcaccttccacatccacggcgacgcc
gtcgacgtcttcccggcccaggccgccacgcccgtgcgcatcgagttctttggcgacgag
atcgaccgcgtgaggcgcatggtggcctccacgggccagacgatcggcgacctggagagc
gtcacggtgcgcccgtgccgcgagctcgccctcacggacgagacggttgcccatgcccgc
aaggccctgtggacggccgcccagaacgacacgaagctcgctgccgacctcgagctcatc
gaggcacgcagctccgagccggcgctcgagcgctacctgcccgcgctctacggcaagacg
gcgagcccgctcgagcacgtctgcgccgatgccctcatgtgctttgccgagccccgtgcc
ctgttcgacgactgcgtgcgtggctcagacgaggccgagcagctcgcgcgcaacgccggc
gtgagcacgaagggcctgttcacggccccgcgcgacatggacttcggcagccagcagcgc
ctgtcgttcgcgagcatgctgcgcgtgggcacgcaggtcacctccgagctgcccattcgc
caaccgggcatctccggcagcgacacgaggcttctcggccgcgtccgccagctcgtgggc
gacggcttctccgtgctgttcgccgtgccggaccgctctgcgcgcgagcacctcgagctc
aactttggcgacgagcacatcatgttcggcgagtccctcgcgagcgccgccgagaaccgc
gtgccgcttgcagaccccaaggccaacgagcccgcctgcgcgccggcgctgccgcgcggc
caggtgacgttcatcgacgccgccgtgcccgccggcatcgtggcgcccacggccaagctc
gccgttctgtccgtgggcgacctctccgcccgcatggccaagcaccgctcgcgccgccgc
gtcgaccccacgtccataacgtttccgttcaagccgggcgactacgtcgtccacgccacg
cacggcatcgcgctgttcgccgacatcgtgcgccaggaggtgggcggtcgcgagcgcgac
tacttccttctcgagtatgccggcggcgacaagctcttcgtgccgctcgagcaggtggac
cgcatcacgcgctacgttggcccggacggctcgagcccgcgcctcacgcgcctgaacacg
gcggactggtcccgcgcaacgaacaaggcccgcaagaacgccaagcgcctcgcctttgac
ctcgtggacctgtacacgcgtcgtgcgagcgtccaggggcatgccttcgagccggacacc
cccgagcaggaggagatggaggcgtccttcccctacgcgctcacggcagaccagcgcacc
gccgtcaacgacatcaaggccgacatggagacggccaggcccatggaccgcctgctgtgc
ggagacgtgggcttcggcaagaccgaggttgcccttcgtgccgcgttcaagtgcgtggcc
gagggccgccaggtcatggtgctgtgccccaccacgatcctcgcccagcagcacttcgag
acgttcttcaaccgctttgccccgttcgacttcgaggtggaggtgctcagccgcttccgc
acggcaaagcagcagcgcctggcgctcgagggcttcgcgagcggcaaggtgagcgtgctc
gtgggcacgcatcgcctgctgtcgagcgacgtcaacccgcatgacctgggcctcgtcatc
gtggacgaggagcagcgcttcggcgtgcagcacaaggagcagctcaagaacatgcgcgag
caggtcgacgtgctcacgctctccgccacgcccatcccacgcaccatgcagatggccatg
agcggcgtgcgcgacatgagtctcatcatgacgcccccgccgggccgcctgcccgtgaag
gtcacggtgggggagtacgacccggacgttgtctcggccgccatccgcaccgagctcgcg
cgcaagggccaggtctactacgtgagcaaccgcgtcaagacgatcgacgaggccgaggca
cgcgtgctcgaggccgcgcccgaggcccgcgtgggcgtggcccacggcaagatgagcgcc
aagcaggtcgaggacatgatgatgaagttccagcgcggcgacatcgacgtgctcgtggcc
acgaccatcatcgagagcggcatcgacaacccgcacacgaacacgctcatcatcgaggac
tcccagcgcctgggcctggcccagctctaccagctcaaggggcgcgtgggccgaggccgc
acgcaggcctacgcctacttcatgttcccgggcgagcgcccgctcacgcccgaggccacg
gagcgcctcacggcaatcaacgagttccaggagctcggcagcggcatgcgcgtggccatg
cgcgacctcgagattcgcggcgccggctcgctcatgggcgccgagcagcacggaaacctc
tcgagcgtgggctttgacctgtttacccagatgctcggacaggccgtggccgaggcccgc
ggcgatgccgccgatgacctcgcgcagagcgaggtcaacatcaacctgccggccgacttc
tatctggccgaggagtacctgcccgaggtggaccgccgcgtgctcgtctaccgaaagctc
gcctgcgccatggagctcgccgaggtcgatgccctgcagcacgagtgcgaggagagcttt
ggctctctgccccaggccgcgtgcaacctgttcgaccgcacgcgcatccgcatccgcgcg
cagcgcctgggcgtgtcgagcgtctcgattgcgagtggcaggatcatcttccaggggctc
aagtgctcgcgcgagctcacgctcaagctcaaggagcagcgagcgctcgtgtaccccaag
accgagaaggtcgcctacccgctgcgccgcgacgaggcgggtgctgtggcgcaagccctc
tccgtcctcgagcttgccggcggagacgacgaccccgaggagtag
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