Parolsenella catena: Pcatena_07660
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Entry
Pcatena_07660 CDS
T05797
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pcat
Parolsenella catena
Pathway
pcat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pcatena_07660 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcat03019
]
Pcatena_07660 (rnj)
Messenger RNA biogenesis [BR:
pcat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pcatena_07660 (rnj)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF7684
Motif
Other DBs
NCBI-ProteinID:
BBH50179
UniProt:
A0A3G9K868
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Position
843307..844965
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AA seq
552 aa
AA seq
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MAKTPTLRIIPLGGLDGIGKNMTAFECGDDMVLVDAGLMFPDDDQPGIDLVLPDYTYVLE
NEEKLRGIVITHGHEDHTGALPYLLMDLTHKVPIFSSKLTLGMIEGKLAEHNIKSPKFRE
VTDGSSVNLGCFSLQFFSMTHSIPGALGIFLKTPAGTVLHTGDFKLDQTPIDGVRPNYNA
INRFGKQGVDLMLSDSTNANFPGFTPSEATVGASLRHIIKNAPGRVFVASFSSHIHRLQQ
VCDAATAVGRKVVVTGRSMVTNTKIARELGYLKIADEDIVDAFEINDIPEDKIVVLCTGS
QGEPLSALARMANGEHKSLSICEGDTVIISATPVPGNEKSVQGIINSLSKIGCEVYDKTN
ATVHVSGHARQEELKLMLAMVHPRNFMPVHGEAVHLRAHAKLAEGMGIPRDHIFILDNGD
SLQMRGGKVSLGPSYDSGIIYVDGLRIGDTDPVVLRDRQKLSQDGIVTCVVTLRSRSHKV
ADVDVSSRGVSFASDDELLAGIEDTCRTAIDKNNQGSPSVDVLRKAVRNSLSNYLWSKTR
TRPMIIPVVMEV
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaccccgaccctgaggatcatcccgctgggtggtctggacggcatcggcaag
aacatgaccgccttcgagtgcggagacgacatggtgctcgtcgatgctggcctcatgttt
cccgatgacgaccagcccggcatcgacctcgtgcttcccgactacacctatgtgctcgag
aacgaggagaagctccgcggcatcgtcatcacgcacggccacgaggaccacaccggagcg
ctgccgtacctgctcatggacctcacgcacaaggtgccgatcttctcgagcaagctcacc
ctcggcatgatcgagggcaagcttgccgagcacaacatcaagagccccaagttccgcgag
gtcacggatggctcaagcgtcaacctcggctgcttctcgctgcagttcttctccatgacg
cactccatccccggtgctttgggaatctttctcaagacgccggccggcacggtgctgcac
accggcgacttcaagctcgaccagacgcccattgacggcgtgcgccccaactacaacgcc
atcaaccgctttggcaagcagggcgtggacctcatgctctccgactccacgaacgccaac
ttccccggctttacgccgagcgaggccaccgtgggcgcgtcactccgtcacatcatcaag
aatgccccgggtcgcgtgttcgtcgccagcttctcgagccacatccaccgcctgcagcag
gtgtgcgacgccgccacggcagtgggccgcaaggtcgtcgtgacgggccgctccatggtt
accaacaccaagatcgcccgcgagctcggctatctcaagatcgccgacgaggacatcgtt
gacgcgttcgagatcaacgacatccccgaggacaagatcgtcgtgctgtgcaccggcagc
cagggcgagccgctctccgcgctcgcccgcatggcaaacggcgagcacaagagcctctcc
atctgcgagggcgacacggtcatcatctccgccaccccggtcccgggcaacgagaagagc
gtccagggcatcatcaactcgctctccaagatcggctgcgaggtctatgacaagaccaac
gccacggttcacgtctccggccatgctcgccaggaggagctcaagctgatgctggccatg
gtgcacccgaggaacttcatgcccgttcacggtgaggccgtgcacctgcgcgcgcacgcc
aagctcgccgagggcatgggcatcccgcgcgaccacatcttcatcctcgacaacggagac
tcgctccagatgcgtggcggcaaagtctcgctcggcccgagctacgactccggcatcatc
tacgttgacggcctgcgcatcggcgacaccgacccggtcgtcctgcgcgaccgccagaag
ctctcacaggacggcatcgtcacgtgcgtcgtgacgctcaggagtcgctcccacaaggtg
gccgacgtcgacgtctcgagccgtggcgtgtcgtttgccagcgacgatgagctgctcgcg
ggcatcgaggacacctgccgcacggccatcgacaagaacaaccagggcagcccctcggtt
gacgtcctgcgcaaggccgtccgcaactcgctgtccaattacctgtggtccaagactcgc
acgcgcccgatgatcatcccggtcgtcatggaggtctag
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