KEGG   Parolsenella catena: Pcatena_07660
Entry
Pcatena_07660     CDS       T05797                                 
Symbol
rnj
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
pcat  Parolsenella catena
Pathway
pcat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pcat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Pcatena_07660 (rnj)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcat03019]
    Pcatena_07660 (rnj)
Messenger RNA biogenesis [BR:pcat03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Pcatena_07660 (rnj)
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Anti-Pycsar_Apyc1 DUF7684
Other DBs
NCBI-ProteinID: BBH50179
UniProt: A0A3G9K868
LinkDB
Position
843307..844965
AA seq 552 aa
MAKTPTLRIIPLGGLDGIGKNMTAFECGDDMVLVDAGLMFPDDDQPGIDLVLPDYTYVLE
NEEKLRGIVITHGHEDHTGALPYLLMDLTHKVPIFSSKLTLGMIEGKLAEHNIKSPKFRE
VTDGSSVNLGCFSLQFFSMTHSIPGALGIFLKTPAGTVLHTGDFKLDQTPIDGVRPNYNA
INRFGKQGVDLMLSDSTNANFPGFTPSEATVGASLRHIIKNAPGRVFVASFSSHIHRLQQ
VCDAATAVGRKVVVTGRSMVTNTKIARELGYLKIADEDIVDAFEINDIPEDKIVVLCTGS
QGEPLSALARMANGEHKSLSICEGDTVIISATPVPGNEKSVQGIINSLSKIGCEVYDKTN
ATVHVSGHARQEELKLMLAMVHPRNFMPVHGEAVHLRAHAKLAEGMGIPRDHIFILDNGD
SLQMRGGKVSLGPSYDSGIIYVDGLRIGDTDPVVLRDRQKLSQDGIVTCVVTLRSRSHKV
ADVDVSSRGVSFASDDELLAGIEDTCRTAIDKNNQGSPSVDVLRKAVRNSLSNYLWSKTR
TRPMIIPVVMEV
NT seq 1659 nt   +upstreamnt  +downstreamnt
atggctaagaccccgaccctgaggatcatcccgctgggtggtctggacggcatcggcaag
aacatgaccgccttcgagtgcggagacgacatggtgctcgtcgatgctggcctcatgttt
cccgatgacgaccagcccggcatcgacctcgtgcttcccgactacacctatgtgctcgag
aacgaggagaagctccgcggcatcgtcatcacgcacggccacgaggaccacaccggagcg
ctgccgtacctgctcatggacctcacgcacaaggtgccgatcttctcgagcaagctcacc
ctcggcatgatcgagggcaagcttgccgagcacaacatcaagagccccaagttccgcgag
gtcacggatggctcaagcgtcaacctcggctgcttctcgctgcagttcttctccatgacg
cactccatccccggtgctttgggaatctttctcaagacgccggccggcacggtgctgcac
accggcgacttcaagctcgaccagacgcccattgacggcgtgcgccccaactacaacgcc
atcaaccgctttggcaagcagggcgtggacctcatgctctccgactccacgaacgccaac
ttccccggctttacgccgagcgaggccaccgtgggcgcgtcactccgtcacatcatcaag
aatgccccgggtcgcgtgttcgtcgccagcttctcgagccacatccaccgcctgcagcag
gtgtgcgacgccgccacggcagtgggccgcaaggtcgtcgtgacgggccgctccatggtt
accaacaccaagatcgcccgcgagctcggctatctcaagatcgccgacgaggacatcgtt
gacgcgttcgagatcaacgacatccccgaggacaagatcgtcgtgctgtgcaccggcagc
cagggcgagccgctctccgcgctcgcccgcatggcaaacggcgagcacaagagcctctcc
atctgcgagggcgacacggtcatcatctccgccaccccggtcccgggcaacgagaagagc
gtccagggcatcatcaactcgctctccaagatcggctgcgaggtctatgacaagaccaac
gccacggttcacgtctccggccatgctcgccaggaggagctcaagctgatgctggccatg
gtgcacccgaggaacttcatgcccgttcacggtgaggccgtgcacctgcgcgcgcacgcc
aagctcgccgagggcatgggcatcccgcgcgaccacatcttcatcctcgacaacggagac
tcgctccagatgcgtggcggcaaagtctcgctcggcccgagctacgactccggcatcatc
tacgttgacggcctgcgcatcggcgacaccgacccggtcgtcctgcgcgaccgccagaag
ctctcacaggacggcatcgtcacgtgcgtcgtgacgctcaggagtcgctcccacaaggtg
gccgacgtcgacgtctcgagccgtggcgtgtcgtttgccagcgacgatgagctgctcgcg
ggcatcgaggacacctgccgcacggccatcgacaagaacaaccagggcagcccctcggtt
gacgtcctgcgcaaggccgtccgcaactcgctgtccaattacctgtggtccaagactcgc
acgcgcccgatgatcatcccggtcgtcatggaggtctag

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