Candidatus Parvibacillus calidus: HWD63_10305
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Entry
HWD63_10305 CDS
T10915
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcau Candidatus Parvibacillus calidus
Pathway
pcau03030
DNA replication
pcau03430
Mismatch repair
pcau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HWD63_10305 (dnaE)
03430 Mismatch repair
HWD63_10305 (dnaE)
03440 Homologous recombination
HWD63_10305 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcau03032
]
HWD63_10305 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcau03400
]
HWD63_10305 (dnaE)
Enzymes [BR:
pcau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HWD63_10305 (dnaE)
DNA replication proteins [BR:
pcau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HWD63_10305 (dnaE)
DNA repair and recombination proteins [BR:
pcau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HWD63_10305 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
PHP_C
Motif
Other DBs
NCBI-ProteinID:
QLH29739
LinkDB
All DBs
Position
complement(2400336..2403911)
Genome browser
AA seq
1191 aa
AA seq
DB search
MASFAHLHCHTQFSLLDGASDISLLYKKAVADKMPGIAITDHGNMFGVFKFVSEAAKYNV
KGQDPVIKPIVGCEFYLVEDRFKRQFTKTLKDKRYHQLMIAKNEVGYKNLCKLSSLGYIE
GLYGKYPRIDKKLVEQYHEGIIATSCCLGAIIPQLILEDKIEEAEEELKWWVDLFDEDYY
IELQRHKIPDQEKVNQVLLRFARKYNLKVIASNDAHYVDREDSNAHDILLCVNTGEKQAT
PKSDGFNVDESDGRGAXFGFYNDEFYFKTTDEMTHLFHDVPEAIENTLDIVEKVELLDLN
KNILLPHYTIPEKFKTQDEYLRHITYLGAKERYKELTPEVIERLDFELGVIENMGFAGYF
LIVADFIRAGRDIGVFVGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDRKSMPD
IDTDFDDEGRQKVIDYVIEKYGKNQVAQIITYGTMAAKSXIKDVARVLDLPLPQSNELTK
MFPEKLGISLNRVLKAPLTGENSLEEHDKLSTDDMAKVNELRQIFYNGTDLRSMVLLEAL
KLEGSVRNVGVHAAGVIIAPTNLMDILPVATAKDSELLVTQYDGKIVESAGVIKMDFLGL
KTLSIIKDCLQYIKENHKVEIDIDAIPLDDGPTFELFQRGDTFGTFQFESAGMRKYLKEL
KPDRLEDLISMNALYRPXSMDYIPSYINRKHGLEEVTYDIDEMKGILEETYGITVYQEQV
MLLAQQLAGFSKGDADGLRKAMGKKDKKTLDSLKGKFMEGIRARNFNEAKANKVWTDWEK
FAAYAFNKSHSTCYAFIAYQTAYLKANYLPEFMAANLKHQTNIEKITQYIEQCKASDINV
LGPDVNESKIAFAVNARGDIRFGLSSIKGIGDGPSQDILDARGSEPFADIYDFVVRVNAR
SINKKTMEALVYSGAFDCFNFEREAYFSTNDKDLTFIEQLIRYAAAMKDMQEGSTMSLFE
DDLDQVITQPQPFKYQPWAINYKLGKEKETIGLYASGHPLDAYKVELEHLCNYSLSQLDS
IDKLETVVRTGGLITSAYHGFTKXGDPYGKIELIDFNGKYSXXVSKDLYHKSKSYLAEGN
KLFIEAVYRPVFRGGRPEIVITSIRLLESVGDTYFKSVTLTMPIEMLTKKTIELLHQFVS
ENHGVQKLKIVIVDEASKVVLRTLAHDGIAINQLLLDIAIQNGMEYQVEMN
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggcctcatttgcacaccttcactgtcatactcaattttccctgctggatggagcatcg
gatattagcctgttatataaaaaggctgtggctgataaaatgcccgggatcgccatcacg
gaccacggtaatatgttcggcgtctttaagtttgtatcagaggccgctaaatacaatgtt
aaaggtcaggatccggtgatcaagcctattgtaggctgtgaattttatttggtggaagat
cgcttcaaacgacagtttaccaagacgttgaaagacaagcgatatcatcagctaatgatt
gcgaagaacgaagtagggtacaaaaacctgtgtaaattgtcctctcttggttacattgaa
ggattatacggcaaatatcccagaattgataaaaagctcgttgagcagtatcacgaagga
attatcgcgacttcatgctgcctgggtgccatcatccctcaattgattctcgaggacaag
attgaggaagctgaggaagaattaaagtggtgggttgatctgttcgacgaagattattat
atcgaattacaacggcataagataccggaccaggaaaaagtaaatcaggtactccttcgg
tttgccaggaagtataacctgaaagtcattgcttccaacgatgctcactatgtggatcgg
gaggacagcaatgcccacgatatcctgttatgtgtgaataccggtgaaaagcaggctaca
cccaaatcagatggtttcaatgtggatgaaagtgatggcaggggcgcangatttggcttt
tataatgatgaattctatttcaaaacaacggatgaaatgactcatctttttcacgatgtg
ccggaagcgattgaaaatacactggatattgtagaaaaggtcgaattactggatttaaat
aaaaatattctgctgcctcattatacaattcctgaaaaatttaagacacaggacgaatat
ttgagacacattacctatctgggagcaaaggaaagatacaaggaattgacacctgaggtt
attgaaaggcttgactttgaacttggcgtaattgaaaacatgggctttgcgggttacttc
cttatcgtagcagattttatcagggctgggagggatattggtgtctttgtaggtccggga
cggggttcagctgccggaagtgcggtcgcttattgcatcggtattaccaatattgatccg
attaagtacaatctcctctttgagcgattcctgaatccggataggaagtcaatgccggat
attgatactgactttgatgacgaaggaaggcagaaagtgattgattatgtcattgagaaa
tacggtaaaaatcaggttgcgcagatcatcacctatggtactatggcagccaagagccnn
attaaggatgtcgccagagttttggatttaccattgcctcaatcgaatgagttgaccaaa
atgttccctgaaaaattgggcatatccttgaacagggtactcaaagcaccattgacaggt
gagaatagtcttgaagagcatgacaagctaagtacggatgatatggcaaaggtaaatgag
ctccgccagattttctataatggaaccgatctgcgctcaatggtattactggaagctctg
aagctggaaggttcggtgagaaatgtgggcgtccatgcagcaggtgtaatcatcgcacca
accaacctcatggacatccttccggtagccactgccaaggattcagaactgttggtgaca
cagtatgatggaaagatagttgaatctgccggagttatcaaaatggacttccttgggctt
aaaaccttaagtatcatcaaagattgcttgcagtacatcaaggaaaatcataaagtggag
atagatattgacgccatcccgcttgatgatggaccaacctttgaattgtttcagcgtggg
gatactttcggtaccttccagtttgaaagtgcaggtatgcggaaatatcttaaggagcta
aaacccgaccgattagaggatttgatatctatgaatgccttgtacagaccgnactcgatg
gattacataccttcgtatatcaaccgtaaacacggactggaagaggtaacttatgatata
gacgagatgaaaggtattctggaagaaacctatggcatcacagtatatcaggaacaggta
atgcttcttgcccagcaattagcgggtttctccaaaggtgatgcggatggcttgcgcaaa
gctatgggaaagaaggataagaaaaccctggactcattgaaaggtaaattcatggagggc
ataagggcgagaaacttcaatgaggccaaagccaataaagtgtggactgactgggagaaa
tttgcagcatacgcattcaataagtcgcattcgacctgctatgccttcatagcatatcag
actgcctatctgaaggccaattacctgccggagttcatggcggccaaccttaagcatcag
accaacatagaaaagataacccagtatattgaacaatgcaaggcttcagatatcaatgtg
cttggacctgacgttaatgaaagtaaaattgcatttgcagttaatgccagaggagatatc
cgtttcggtctcagttccataaagggtattggcgacggcccgtctcaggatatcctggat
gcaagaggcagtgaaccatttgccgatatctatgattttgtcgtgcgtgtcaatgccagg
tccatcaataagaagaccatggaagcactggtgtatagcggggcatttgattgcttcaac
tttgaaagagaagcatatttttctaccaacgacaaggatttgaccttcatcgagcaatta
atcaggtatgctgcggcaatgaaagatatgcaggaaggaagcacaatgagtctttttgaa
gatgatttggatcaggtgattactcaaccccaaccttttaagtatcaaccatgggctatc
aattataagcttggaaaggaaaaggagacaattggtctttacgccagcggtcatccattg
gatgcttacaaggttgaattggagcatctttgcaactattccctgagtcaattggattcg
atcgacaagctggagacagttgttcggactggaggcctgattacatcagcttatcacgga
tttactaaanaaggcgatccttatggaaagattgagttgattgatttcaatggaaaatat
tctnttnttgtgtccaaggatctttaccataagtcaaaatcttatttggcggaagggaat
aaattgtttattgaggccgtttataggccggtattcagaggtggtcgaccggaaattgta
atcacctccatacgtcttttggaatctgttggtgatacgtatttcaaatctgtaactttg
acgatgccgattgaaatgctgaccaaaaagactatagagttactgcatcaatttgtgtca
gaaaatcacggtgtccaaaaattaaagatagtaattgtggatgaagcgtctaaagttgta
ctacgcacactggctcacgatggaatcgccatcaatcaattgttgttggatattgccatt
cagaatggaatggaatatcaggttgaaatgaattag
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integrated database retrieval system
