Candidatus Parvibacillus calidus: HWD63_11350
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Entry
HWD63_11350 CDS
T10915
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pcau Candidatus Parvibacillus calidus
Brite
KEGG Orthology (KO) [BR:
pcau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcau03009
]
HWD63_11350 (rlmD)
Enzymes [BR:
pcau01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HWD63_11350 (rlmD)
Ribosome biogenesis [BR:
pcau03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HWD63_11350 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
TRAM
Cons_hypoth95
Methyltransf_11
PrmA
PCMT
Motif
Other DBs
NCBI-ProteinID:
QLH29913
UniProt:
A0A7D5MH93
LinkDB
All DBs
Position
complement(2641230..2642651)
Genome browser
AA seq
473 aa
AA seq
DB search
MGRKRKGFKSIIFENREITGIAEESRSVCRTDDGIVCFVEGAVPXDVVDVLVTQKKKGFY
FGAVHNLVEASPDRIKAPCKHFGICGXCKWQHFHYAGQLREKENKVLQAMLRIGKTEPQE
FQPILGCGEEFFYRNKLEFTFSNKRWLEPEEMSSEGDILKEPGLGFHRAGAFDKVVDIEE
CMLQPDPSNAIRNFVKAFAIRMNWTXFNVRQREGFLRNLMVKTSSIGEVMVLLSFHYKDD
EAIGALMEAIMTNFPEITTLVYVINEKANDTFLDLPIEIYHGPGYIVEKLGEVKYRLGPK
SFFQTNTKQAVRLYDLALEFAGLQPTDHVYDLYTGLGSIALYASSRCKSIVGVENVAPAI
EDARANADWNGISNATFVVGNVEDVVDTGFITKYGRPDVVITDPPRAGMHERVIDTLLQL
ECPKIVYISCNPSTQARDVAMLXTKYNLEKLRAVDMFPQTNHIESVALLTLKK
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgggtagaaaacgtaaaggatttaaatcaattattttcgaaaaccgggagattacgggt
attgcagaagaaagcagatcggtatgcaggaccgatgacggaatcgtttgctttgttgaa
ggggcagttccgngggatgtagtggatgtcctggttacacagaaaaagaaaggcttttat
ttcggagcagtccataatttggttgaagcatcaccggatagaataaaggcaccctgcaaa
cactttggaatttgcgggngttgcaaatggcagcactttcattatgcgggacaattacgt
gaaaaggaaaataaggttttgcaggcaatgttgcgtatcggtaagacagagcctcaggag
ttccagcccatactgggttgcggggaagagtttttctatcgtaacaaactggaatttacc
ttctctaataaacgctggttagagccggaggaaatgagtagtgagggtgatatattaaaa
gagcctggccttggttttcaccgggcgggagcctttgacaaggttgtcgatatcgaagaa
tgtatgttgcaacccgatccatccaatgccattcgcaattttgtcaaagcatttgccatc
cggatgaactggactnttttcaacgtcagacaaagagagggcttcctgcgtaacctgatg
gttaaaacctcttccatcggcgaagtgatggtgttactttctttccattacaaggatgat
gaagcgattggggcgcttatggaggctatcatgactaattttcccgaaattacaacgctg
gtatatgtcatcaatgaaaaggcgaatgatacttttctggatcttcctattgagatttac
cacggcccgggttatatcgtggaaaagctgggtgaagtcaaatatcggctaggccctaag
tcattttttcagacgaatactaagcaggctgtaaggttatacgatctggcccttgagttt
gccgggctgcagcccaccgatcatgtttatgatctctatacaggtttgggcagtatcgcc
ctgtatgcttcgtctcgttgcaaaagtatagttggtgtcgagaatgtcgcccctgccata
gaagatgccagggccaatgcagattggaatggtatctccaatgccacctttgtggttggt
aatgttgaggatgtggtggataccggatttataacaaaatatggaagaccggatgtcgtg
attaccgaccctcccagagccggtatgcatgaaagggtaatagataccctcttgcaattg
gaatgccctaaaatagtatacatcagctgcaatccatccactcaggcacgtgatgtcgcc
atgctgnagactaaatacaatcttgaaaagttgcgggcagtagacatgtttcctcagacc
aatcatatagagtctgttgccttgctgaccctgaagaaataa
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