Candidatus Parvibacillus calidus: HWD63_11685
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Entry
HWD63_11685 CDS
T10915
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pcau Candidatus Parvibacillus calidus
Pathway
pcau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWD63_11685 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcau03019
]
HWD63_11685 (rnr)
03016 Transfer RNA biogenesis [BR:
pcau03016
]
HWD63_11685 (rnr)
Enzymes [BR:
pcau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HWD63_11685 (rnr)
Messenger RNA biogenesis [BR:
pcau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HWD63_11685 (rnr)
Transfer RNA biogenesis [BR:
pcau03016
]
Prokaryotic type
tRNA degradation factors
HWD63_11685 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
WHD_BLACT
Motif
Other DBs
NCBI-ProteinID:
QLH29968
LinkDB
All DBs
Position
complement(2746758..2748926)
Genome browser
AA seq
722 aa
AA seq
DB search
MTKKYPKSFKGRKLNTLELKIIVNRELKNLNGKSYSAAGLIXKLKISNNRDEVQLILEKL
VKEGRVRQTTGGVYQSNNKSSIPEKLFIGKVDLIRSGAAYIIVEGKSEDIYIAPGDLMGA
LDGDTVEVSVVRRKGRQRSDGRVIRIVRRSREIFMGRIFVNKKYSVVTPFKTPDGFEILV
FNEGLNGAEDGDIVTVRVISWPDGKNKMIKXEITEVLSADNASDMEMKSILIGQGFDLHF
SKETLKEAHAIPDSIPEQEIMQRRDMRDIATFTIDPATAKDFDDALSYRLLEDGNMEIGV
HIADVSHYIKPGGPMDKEAYERSTSVYLVDRVLPMLPEKLSNELCSLRPNEDKLTFSAVF
VFDKDTKVVSRWFGKAIIHSDRRFTYEEAQEIIESGVGEYVEELIQLNTIAKKLRDIRYA
KGAISFESDEIQFRLDENGVPVEIFIKERKDAHLMVEDFMLLANRSVAEYIHQKGASGEI
PFIYRVHDRPDNKKLSEFATFAAELGFKMDLSKPAAVIHSFNLLAKXAEEDETLRLITPL
AIRTMAKAEYSTNNIGHFGLGFDDYTHFTSPIRRYSDVLAHRILFRNLNSAIYREDKSLL
DVFCKHISAQERKAMEAERESVKYKQVEFMSRFVGTEFNGIISGMHDRGVFVELDDNHCE
GMIRFDRFDESFILDDSKMKAFGRISGRTIKIGDRIRIKVLNADLDNRQLDFAPVMNQEV
YK
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaatatcccaagtccttcaaaggaaggaagttgaatacactggaactaaag
atcatcgttaatcgtgaattgaaaaatctcaatggcaaatcatactctgctgcgggcttg
atanaaaaacttaaaatcagtaacaaccgcgatgaagtccaactaattttggaaaaactg
gtaaaggaaggcagagttagacagacaaccggaggtgtttatcaaagtaataacaaatca
tccattcctgaaaaactttttattggaaaggtggatttgattcgttctggagccgcctat
ataatagtagaaggaaaatccgaagatatctacatagctccgggagacctgatgggcgca
cttgatggcgatacagttgaggtatcagtggtaagaaggaaaggccgacaaagatccgac
ggcagagttatacgtatcgtacgccgctcgagggaaatattcatgggccgaattttcgtc
aataaaaaatatagtgtagtcacccctttcaagacacctgatggttttgagatattagtc
ttcaatgaaggattaaatggggcggaagatggtgatattgtgactgttcgagtcattagc
tggcctgatggtaaaaacaaaatgattaagngggaaatcacggaagtgttaagtgctgac
aacgcctccgatatggagatgaaatctattttgataggccagggctttgatctgcatttt
tcaaaagaaacgctgaaagaggctcacgccataccagacagcatcccggaacaagaaata
atgcagcgcagagatatgcgcgatattgcgacatttactatagaccctgctacagcgaaa
gattttgacgatgctctttcatatcgtttattggaggatggtaacatggagataggagta
cacatcgctgatgtttctcattatatcaagccgggtggcccgatggataaggaagcatac
gaacgcagcacatccgtatatcttgtcgatcgtgttttgccgatgctgccagaaaagtta
tccaatgaattatgttccctgcgacccaatgaagacaaactgacattttctgctgtattt
gtttttgacaaggatacaaaggttgtttcccgatggttcggtaaggcaattattcatagt
gataggcggtttacttatgaagaggctcaggaaatcatagaatccggtgtaggggaatat
gtagaggagttgatacaacttaacacaatcgccaaaaagctacgtgatatacgatatgcc
aaaggagccatatcgtttgagtcggatgaaattcaattcagattggatgaaaatggagtt
ccggtggagatttttattaaggaaagaaaggatgcccatctgatggttgaagattttatg
ttacttgccaatcgatctgtagctgagtacatccatcaaaagggagcaagtggcgaaatt
ccatttatttaccgtgtgcatgaccgcccggataataagaaattgagtgaatttgccaca
tttgctgcggaattgggattcaaaatggacctttccaaacctgcagccgtcatccattca
tttaatctcctggctaaanaagctgaggaggatgaaacgctgagactgattacacctctt
gccatacgcacaatggcgaaagccgaatattcaaccaacaatattggccatttcggtctt
ggctttgatgattacacccactttacttctccaattcgtagatatagtgatgtcctggca
caccgaatcttgtttcggaatctgaatagcgccatttatagagaggacaaatcgctgctg
gatgtattttgtaagcatatttcagctcaggaacgaaaggcgatggaagcggaacgtgaa
tccgttaaatacaagcaggttgagtttatgagtcgatttgtcggtactgaattcaatgga
atcatttccggaatgcacgaccgtggtgtgttcgtggaactagatgacaatcattgtgag
gggatgatacgatttgaccggtttgatgaatcttttattctggacgacagtaaaatgaag
gcatttggtaggatttcaggccgaaccatcaagattggtgatcggatcagaattaaggtg
cttaatgctgatcttgacaacagacagttggatttcgcgcctgtaatgaaccaggaggtt
tataaataa
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