Candidatus Parvibacillus calidus: HWD63_11870
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Entry
HWD63_11870 CDS
T10915
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcau Candidatus Parvibacillus calidus
Pathway
pcau03030
DNA replication
pcau03430
Mismatch repair
pcau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HWD63_11870
03430 Mismatch repair
HWD63_11870
03440 Homologous recombination
HWD63_11870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcau03032
]
HWD63_11870
03400 DNA repair and recombination proteins [BR:
pcau03400
]
HWD63_11870
Enzymes [BR:
pcau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HWD63_11870
DNA replication proteins [BR:
pcau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HWD63_11870
DNA repair and recombination proteins [BR:
pcau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HWD63_11870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
Motif
Other DBs
NCBI-ProteinID:
QLH30003
LinkDB
All DBs
Position
complement(2791543..2794485)
Genome browser
AA seq
980 aa
AA seq
DB search
MFLNTHSWFSLRYGTLSPERLADTARSLGIRAMALTDINNTSCAWQYIEACRRNDVRPIL
GIEFRRDDGRMLYVGIARNNTGWANLCRMLSEVSLDGKSLPACAPELDSVYFIYRNQPKD
IRTFRDDEFYGIRPDEARALYSSPLRKHMDRLVAFTPITFADEDGYKIHKLLRCIDRNIL
LGQLRQQDCAGSDEVFMTEAALRDAFALFPDIIRNTEMLTDSCSIDMTASXINNRQCFTD
SKDDDYRLLAKLAVNGCIRRYGRHNEQANKRVDSELRVIRELDYSAYFLITWDIVRYGRS
VGYFHVGRGSGANSIVAFCLGITDVDPLELDLYFERFINPHRTSPPDFDIDFSWDERDDV
TDYIFKRYGREHTALLATYNTFKGKSIIRELGKVVGLPKSDIDVIVDHPLDTDRHHPFGK
HLFRYGKMMEGMPNYLSIHAGGILISERPLYXRTALKLMPKGFPVTHFDMYGAEDLHFHK
YDILSQRGLXRIKDAIDIIARNRGRIVDIHDIYRIKHDEAVRXQLRSGHCTGCFYIESPA
MRGLISKLKCDNYVHLVAASSIIRPGVAKSGMMREYIQRXHHPDKVQYLHAVFEQHLAET
FGVMVYQEDVMKIVHHFAGLGLDESDVLRRIMTGKKKNSDTFRDLQARYFDNCRXRGYSD
ALTNEVWRQIESFSGYSFCKAHSASFAVESFQSLYLKTYYPMEFMVAVINNFGGFYSTEL
YVHEARVSGATIHPPCVNHSDRLTNIHGTDIHIGLGLIRDLEYTTIRNILKARAEDGPFR
GLEDFVSRVAIDATQLTLLIRIGAFRFTGLNKYELMWEKNTVYNARHRETVGMPVLFEPE
HEQFSLPVMTEVDYEQAFDEIELLGFPLTSPFELVEDELPARIPAQDMMRHAGRRVTMVG
YYVTRKPVRTVSKTLMYFYTWVDEAGDFFDTVHFPPAVNRSPFKGSGCYIIRGKVXPDFG
FPSLEVDSMEKMPWIKDGRY
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
gtgtttctcaatacccattcttggtttagcctcagatatggcacactgtcaccggagcgg
ctggctgatactgcccggtcgctgggcatccgggctatggcattgaccgatatcaacaat
acatcctgtgcctggcaatatatcgaggcctgtcgtcgcaacgatgtccggccgattctt
ggtattgaatttcgccgggacgacggtcgtatgctatatgttggcatagcccgtaacaat
accggttgggccaatctttgccgcatgctttcggaagtgtcgctcgatggaaagagccta
cctgcatgtgcgccggagttggattccgtgtatttcatttaccgcaatcagccaaaggat
atacgtacgttccgtgatgacgagttttacggcattcgtcctgatgaggcacgggcgctg
tactcttcgcccctgcgtaagcatatggacaggttggttgcatttacgcccattaccttt
gccgatgaggatggctacaagatacacaagctgctccgctgtatcgaccgcaatattctt
cttgggcagttacgccaacaggattgtgcgggttctgatgaggtatttatgactgaggcg
gcattgcgtgatgcctttgccttgtttccggacatcatccgcaataccgaaatgctgacc
gactcctgttccatcgacatgacggcctcanaaatcaataaccggcaatgttttaccgac
agcaaggacgatgattacaggctgcttgccaagcttgcagtcaatggttgtatccgtcgc
tacggacgtcacaatgagcaggccaacaagcgcgtcgattctgagctcagggtcatccgg
gagcttgattacagtgcctacttcctcattacctgggatatcgtgcggtatggtcggagt
gtcggttactttcatgtgggccggggcagtggagccaattccattgtggctttttgcctt
ggcatcaccgatgtggatccgctggagctggatctgtatttcgagcgcttcatcaacccg
catagaacctccccgccggactttgatatcgatttttcgtgggacgaaagggatgatgtg
acggactatatcttcaaacgctacggcagagaacataccgcactgcttgccacctacaat
accttcaagggcaaatccatcatccgtgagctgggcaaggtagtcggtctgccgaagagc
gatattgacgtcatcgtggatcatccgctcgataccgaccgccatcatccttttggcaag
catctctttcgctatggtaagatgatggagggcatgcccaactatttgtcgatccatgcc
ggcggtatcctcatcagcgaacggccgctttacnggcgcacggcgctgaaactcatgccc
aagggctttccggtcacacatttcgatatgtacggagcggaagacctgcactttcataag
tatgatatcctcagccaacgcggattgnggcgcatcaaggatgccattgacatcatcgcc
cgcaataggggccgcatcgtggacatccacgacatataccgcatcaagcacgatgaggct
gtccggncgcaactccgaagtggccactgcaccggttgtttttacatcgaatcgcctgcc
atgcgtggcctgatcagtaagctgaagtgcgataattatgtgcatcttgtggctgccagc
tccatcatacggccgggtgtggccaagtcgggcatgatgagggagtatatccagcggncg
catcaccccgataaggtgcaatatcttcatgctgtcttcgagcagcatctggcagagaca
tttggtgtgatggtgtatcaggaggatgtgatgaagatcgtccatcactttgccggcctt
ggcctggacgaatccgatgtcctgagacgcatcatgacaggtaagaaaaagaattcggac
accttccgcgacctgcaggccaggtattttgacaattgcaggncgcgcggctattctgat
gcgttgaccaatgaagtatggcgtcagatcgagagcttcagcggctattcgttctgcaag
gctcattcggcaagttttgctgtcgaatctttccaaagcctctatctcaagacttattat
ccgatggagtttatggtcgcggttatcaacaatttcggtgggttctacagcactgagttg
tacgtacacgaagccagagtgagcggcgccactatccatccaccctgtgtcaatcatagc
gaccgactgaccaatatccatggaacagacatccatatcggcctgggcctgatccgtgat
ctggaatataccaccattcgcaatattctgaaagcgcgggcagaggatggtccgtttcgt
gggctggaagactttgtcagccgtgtggccatcgatgccacgcaactcaccctgctcatc
cgcatcggcgccttccgctttacagggttgaacaagtatgagctgatgtgggagaaaaac
actgtgtataacgccagacatcgcgagacggtgggcatgccggtgttgtttgagccggag
catgaacaattttccttgcctgtgatgacggaggtggattatgagcaggcttttgacgag
attgaactgctcggatttccgttgacatcgccttttgaactggtcgaggatgagcttccc
gcacgtattcctgcacaggacatgatgcgtcatgccggtcgcagggttactatggttggg
tattatgttacccgtaagccggtgcgtaccgtaagcaagacactgatgtatttctatacc
tgggtggacgaggctggcgatttttttgataccgtacacttcccgccagccgtcaaccgc
tcgcctttcaaaggctccggctgttatatcatccggggaaaggtgnggcccgacttcgga
ttcccgagcctggaggtcgacagcatggaaaagatgccgtggatcaaggatgggcggtat
tga
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