Pseudomonas cavernae: D3880_00785
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Entry
D3880_00785 CDS
T08208
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pcav
Pseudomonas cavernae
Pathway
pcav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
D3880_00785 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcav03400
]
D3880_00785 (recD)
Enzymes [BR:
pcav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
D3880_00785 (recD)
DNA repair and recombination proteins [BR:
pcav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D3880_00785 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
Helicase_RecD
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
nSTAND3
AAA_16
UvrD_C
AAA_28
CbiA
T2SSE
AAA_5
Flavi_DEAD
DEAD
Terminase_6N
ATPase
Motif
Other DBs
NCBI-ProteinID:
AYC31009
UniProt:
A0A385YVW6
LinkDB
All DBs
Position
complement(161577..163415)
Genome browser
AA seq
612 aa
AA seq
DB search
MNPADLPLGPLERALLDSLQRLNPDAAASALAAAALCCEALGKGDVCLPLARWAGQRPWP
DCAFGLPALADWHAQLRASKLVGAPGEFAPLILDGERLYLARYQAYEAQLAAQLLARAAD
LPVVDEAQLSASLARLFAFNASLQAGQQPDWQRLAAAQAVRRNLAVISGGPGTGKTTTVV
RLLAALLEQPGGERLAIGLAAPTGKAAARMAEALRNAKAALPVSEAVKAALPEEARTLHR
LLGSRGDNPQVRHHAANPLALDVLVVDEASMVDLALMAKLVDALPPRARLILLGDKDQLA
AVEAGAVFAELCEGRGFDARAAADLERISGQRVAVEAPRSRLGDAVVLLSHSHRFAGDSG
IGELARRINAGAASATLNLLKEDRRDLVWQPQPSPAALLERLEQGYQPYLQAARGGEPTA
AFAAFNAFRALTAQREGAFGVSGLNEALEARLKRRFGLAARERWYAGRAVMVRQNDYALG
LFNGDIGLCLASESGLRVFFEGEDGFRAFAPARLPSHDSAFAMTVHKSQGSEFAEVLLAL
PETPSPLLTRALLYTGITRAKHKVELWALPARLAEAVNTKAERAAGLAERLALPGAAPRQ
DPPGTAGQLDLF
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccgccgacctgcccctcggcccgctggagcgcgccctgctcgacagcctgcag
cgcctcaatccggacgcggcggccagcgcgctggccgccgccgcgctgtgttgcgaggcg
ctgggcaagggcgacgtgtgcctgccgctggcgcgctgggccgggcagcggccgtggccg
gactgcgccttcggcctgccggcgctggccgactggcatgcgcagttgcgggcatccaag
ctggtcggcgcaccgggtgaattcgcgccgctgatcctcgacggcgagcgcctgtatctg
gcccgctaccaggcctacgaggcgcagctggcggcgcagctgctggcgcgtgcggcggat
ctgccggtggtcgacgaggcgcagttgagtgccagcctcgcccgcctgtttgccttcaat
gcttcattacaggcggggcaacaacccgactggcagcgcctggccgccgcccaggcggtg
cgccgcaatctggcggtgatctccggcggccccggcaccggcaagaccaccaccgtggtg
cgtctgctcgccgccctgctcgagcaacccggtggcgaacgcctggccatcggcctggcc
gcgcccaccggtaaggcggcggcgcgcatggccgaagcgctgcgcaatgccaaggcggcg
ctgccggtcagcgaggcggtgaaggcggcgctgccggaagaggcgcgcaccctgcaccgc
ctgctcggcagccgtggcgacaacccgcaggtgcggcatcacgcggccaacccgctggcg
ctcgacgtgctggtggtggacgaggcgtcgatggtcgacctggcgctgatggccaagctg
gtcgacgccctgccgccccgcgcacgcctgatcctgctcggcgacaaggaccagctggcc
gccgtcgaggccggcgcggtgttcgccgaactctgcgagggccgtggtttcgacgcccgg
gccgcggccgatctcgagcgcatcagcggtcagcgggtggcggtcgaggcgccgcgctcg
cgcctcggcgatgcggtggtgctgctcagccacagccaccgcttcgccggcgacagcggt
atcggcgaactggcgcggcggatcaatgccggcgcggccagcgccaccctcaacctgctc
aaggaagaccgccgcgatctggtctggcagccgcagccgagcccggcggcgctgctggaa
cgcctggagcagggctatcagccctatctgcaggccgcccgtggcggcgagccgacggcc
gccttcgccgccttcaatgccttccgcgccctcaccgcccagcgcgagggcgcgttcggc
gtcagcggcctcaacgaggccctggaggcgcgcctcaagcgccgcttcggcctcgccgcg
cgcgagcgctggtatgccgggcgggcggtgatggtgcggcagaacgactacgcgctcggc
ctgttcaacggcgacatcggcctgtgcctggccagcgagtccggcctgcgggtgttcttc
gaaggtgaagacggcttccgcgccttcgccccggcgcgcctgcccagccacgacagcgcc
ttcgccatgaccgtgcacaagagccagggttcggagttcgccgaagtgctgctggccctg
ccggagacgccgagcccgctgctgacccgtgcgctgctctacaccgggatcacccgcgcc
aagcacaaggtggagctctgggccttgccggcgcgcctggccgaggcggtgaacaccaaa
gccgagcgcgccgccggactggccgagcgcttggcgctgcccggggccgcgccacggcaa
gacccgccgggtacggcggggcagctggacctgttctga
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