Pseudomonas cavernae: D3880_02420
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Entry
D3880_02420 CDS
T08208
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pcav
Pseudomonas cavernae
Pathway
pcav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
D3880_02420 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcav03021
]
D3880_02420 (rpoD)
Transcription machinery [BR:
pcav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D3880_02420 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AYC31314
UniProt:
A0A385YXM9
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All DBs
Position
complement(533779..535629)
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AA seq
616 aa
AA seq
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MSGKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDSILAEYQRVTTEGGRLSEVLSGYIDPDDGIAEPSEA
PVPDLKGGAAEAESEDDEESDGSADSEEEEGDGGPDPEEALRRFTTVAEQLDKTNKALKK
HGRGSKQGIAELLSLAELFMPIKLVPKQFEALVTRVRDALERLRAQERAIMQLCVRDARM
PRADFLRLFPGNEVNESWAADLAKGKAKYADAIGNLLADIQRNQQKLAALQTECSLTIAE
IKDVNRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtcccgtttgaaagagttgatcagccgtggtcgtgag
cagggctacctgacttatgccgaggtaaacgaccacctgccggaggatatttccgatccg
gaacaggtggaagacattatccgcatgatcaacgacatgggcatcaacgtattcgagagc
gccccggatgccgatgccctgttgttggccgaagccgataccgatgaggccgccgccgaa
gaagccgccgctgcgctagccgcagtggaaaccgatatcggccgcaccaccgacccggtg
cgcatgtacatgcgcgaaatgggtaccgtcgagttgctgacccgcgaaggcgaaattgaa
atcgccaaacgcatcgaggaaggcatccgcgaagtgatgagtgccattgcccacttcccc
ggcactgtcgacagcatcctcgccgagtatcagcgcgtcaccaccgaaggtggccgtctg
tccgaagtgctcagcggctacatcgacccggatgacggcatcgccgagccgagcgaagca
cccgtgccggacctcaagggcggcgctgccgaggcggagagcgaagacgacgaagaaagc
gatggctcggccgatagcgaagaggaagaaggcgatggtggtccggacccggaagaggcc
ctgcgccgcttcaccaccgtggccgagcagctggacaagaccaacaaggccctgaaaaag
catgggcgcggcagcaagcaaggcatcgccgagctgctgtcactggccgaactgttcatg
ccgatcaagctggtgccgaagcagttcgaagccctggtcacccgcgtgcgcgacgccctg
gagcgcttgcgcgcccaagagcgtgccatcatgcagctgtgcgtccgcgatgcacgcatg
ccgcgtgccgacttcctgcgcctgttccccggcaatgaagtcaacgagagctgggccgcc
gacctggccaagggcaaggccaaatacgccgacgcgattggcaacctgctggccgacatt
cagcgcaaccagcagaagctcgccgccctgcaaacggaatgcagcctgaccatcgccgaa
atcaaggacgtcaatcggcgcatgtcgatcggcgaagccaaggcccgtcgggcgaagaag
gagatggtcgaggccaacctgcgcctggtgatctccatcgccaagaagtacaccaaccgc
ggcctgcagttcctcgacctgattcaggaaggcaacatcggcctgatgaaggcggtggac
aagttcgaataccgccgcggctacaagttctcgacctatgccacttggtggattcgccag
gcgatcacccgctcgatcgccgaccaggcgcgcaccatccgtatcccggtgcacatgatc
gagacgatcaacaagctcaaccgcatctcccgccagatgctgcaggagatgggccgcgag
ccgactccggaagagctgggcgaacgcatggacatgcccgaggacaagatccgcaaggta
ttgaagatcgccaaagagccgatctccatggaaaccccgatcggcgacgacgaagactcg
catctgggcgacttcatcgaggattcgaccatgcaatcgccgatcgacgtggcgaccgtg
gaaagcctcaaggaagccacccgcgaagtgctagccggcctcaccgcacgggaagccaag
gtcctgcgcatgcgcttcggcatcgacatgaataccgaccacaccctcgaggaagtcggt
aagcagttcgatgtcacccgcgagcggattcgccagatcgaggccaaggcgctacgtaag
ctgcgccatccaacgcgcagcgagcatctacgctccttcctcgacgagtga
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