Pseudomonas cavernae: D3880_02930
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Entry
D3880_02930 CDS
T08208
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pcav
Pseudomonas cavernae
Pathway
pcav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D3880_02930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcav03021
]
D3880_02930
03400 DNA repair and recombination proteins [BR:
pcav03400
]
D3880_02930
Enzymes [BR:
pcav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D3880_02930
Transcription machinery [BR:
pcav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D3880_02930
DNA repair and recombination proteins [BR:
pcav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D3880_02930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
AYC31405
UniProt:
A0A385YWV6
LinkDB
All DBs
Position
626791..627792
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLNLAKKGSGVVTAADIQLDHD
VEIVNGDHVIANLADNGALNMKLTVRRGRGYEPADARQSDEDESRSIGRLQLDSSFSPVR
RVAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgaccccccgccacatcgatgtgcaggtggtcagt
ccaacccgcgccaagatcaccctcgagcccctcgagcgtggttttggccataccctgggc
aacgcgctgcgtcgcattctgttgtcctccatgcctggctgtgcagtggtcgaggccgag
attgacggtgtgcttcatgagtacagcgccatcgaaggtgtgcaggaagatgtcattgaa
atcctgctgaacctgaaaggcctggccatcaagttgcacggtcgtgacgaagtcaccctg
aatctggccaagaagggctcgggtgtggtcaccgcggccgatattcagctggatcacgat
gtcgagatcgtcaacggcgatcacgtaatcgccaacctggcggacaacggtgctctgaac
atgaagctcactgtgcgtcgtggtcgcggctatgagccggctgacgcgcgtcagagtgat
gaagatgaaagccgcagcattggccgtctgcagcttgactcctcgttcagcccggtccgt
cgtgtggcatacgtggtggaaaacgcccgtgtcgagcagcgtactaacctggacaaactg
gttattgatctggaaaccaacggtactctggaccctgaagaggcaatccgtcgtgccgcg
accatcctgcagcagcagttggccgcgttcgtcgacctcaagggcgacagcgaaccggtt
gtggttgagcaggaagacgagatcgatccgatcctgctgcgtccagttgacgaccttgaa
ttgaccgtgcgttcggccaactgcctgaaggcggagaacatctactacatcggcgacctg
atccagcgcaccgaagtagagctgttgaaaactccgaacctgggcaagaagtccctgacc
gagatcaaggacgttctggcctcccgtggtctgtccctcggcatgcgcctcgataactgg
ccgccggcaagtctgaagaaagacgataaggcgactgcctga
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