Pseudomonas cavernae: D3880_05720
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Entry
D3880_05720 CDS
T08208
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pcav
Pseudomonas cavernae
Pathway
pcav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3880_05720 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcav03019
]
D3880_05720 (rhlB)
Enzymes [BR:
pcav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D3880_05720 (rhlB)
Messenger RNA biogenesis [BR:
pcav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D3880_05720 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AYC31907
UniProt:
A0A385Z118
LinkDB
All DBs
Position
complement(1241932..1243398)
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AA seq
488 aa
AA seq
DB search
MLKALKKMFGKGEGEQPASAPVTGSSAPTPDKAGETRARKPKADKPARESKPRETAATAE
TQPSSEPPKADKPHHERLHKPSVSTWKLEDFAVEPQEGKTRFHDFALAPELMHALHDLGF
PYCTPIQAGVLGFTLKGRDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALV
IAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLRQLEARHCDILVATPGRLLDF
NQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKGERQTLLFSATFTEDVMNL
AKQWTTDPAIVEIESENVASDTVEQHVYAVAGSDKYKLLYNLITQNDWTRVMVFANRKDE
VRRIEERLVRDGVSAAQMSGDVPQHKRIKTLEGFRAGHIRVLVATDVAGRGIHIEGISHV
INFTLPEVPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEALLGRKINCEYPPVEL
LKSVPRKH
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcaagaaaatgtttggcaagggcgaaggcgaacagccggcgtccgcc
ccggttaccggctcttccgctcccacccccgacaaagcgggtgaaacccgcgcccgcaag
ccgaaagccgacaagccggcccgcgagtcgaaaccgcgcgaaaccgccgccacggccgag
acacagcccagcagcgagccgcccaaggccgacaagccgcaccacgagcgactgcacaag
ccgtcggtcagcacttggaagctggaagacttcgcagtcgaaccgcaggaaggcaagacc
cgcttccatgacttcgccctggcgcccgagctgatgcacgccctgcacgacctcggcttc
ccctactgcacaccgatccaggccggcgtgctcggcttcaccctcaagggccgggacgcc
atcggccgcgcgcagaccggcaccggcaagaccgcggccttcctcatctcgatcatcacc
cagctgctgcagacgccgccgccgaaggaacgctacatgggcgaaccgcgcgcgcttgtg
atcgccccgacccgcgagctggtggtgcagatcgccaaggacgccgcggcgctgaccaag
tacaccggcctcaacgtcatgagcttcgtcggcggcatggacttcgacaaacagctgcgc
cagctggaagcccgccactgcgacatcctcgtcgccacccccggccgcctgctggacttc
aaccagcgcggcgaagtgcacctggacatggtcgaggtgatggtcctcgacgaagccgac
cgcatgctcgacatgggtttcatcccgcaggtccggcagatcatccgccagaccccaccg
aagggcgaacgccagaccctgctgttctccgcgaccttcaccgaggacgtgatgaacctg
gccaagcagtggaccaccgacccggcgatcgtcgagatcgagtcggaaaacgtcgccagc
gataccgtcgagcagcacgtctacgccgtggccggcagcgacaagtacaagctgctgtac
aacctgatcacccagaacgactggacccgcgtaatggtcttcgccaaccgcaaggatgag
gtgcggcgcatcgaggaacgcctggtcagggacggtgtcagcgccgcgcagatgtccggc
gacgtgccgcagcacaagcgcatcaagaccctcgaaggcttccgcgccgggcatatccgc
gtgctggtggccaccgacgtggccggccgcggcatccacatcgaaggcatcagccacgtg
atcaatttcaccctgccggaagtgccggacgactacgtgcaccgcatcggccgcaccggc
cgcgccggcgccagcggcacctcgatcagcttcgccggcgaggacgacgccttcgccctg
ccgccgatcgaggccctgctcgggcgcaagatcaactgcgaatacccgccggtcgagctg
ctcaagtcggtaccgcgcaagcactga
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