Pseudomonas cavernae: D3880_05810
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Entry
D3880_05810 CDS
T08208
Symbol
sbcD
Name
(GenBank) exonuclease subunit SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pcav
Pseudomonas cavernae
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcav03400
]
D3880_05810 (sbcD)
DNA repair and recombination proteins [BR:
pcav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D3880_05810 (sbcD)
Archaeal homologous recombinant proteins
D3880_05810 (sbcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
AYC31925
UniProt:
A0A385YYG6
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Position
1262118..1263338
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AA seq
406 aa
AA seq
DB search
MRLLHTSDWHLGQHFMGKTRQAEHQAFLAWLLAQVREQQVDAVLVAGDIFDTGAPPSYAR
ELYNHFVVELHAIGAELVVLGGNHDSVAMLGESKTLLAQLNTRVIPGVCAELVEQLLVLH
RRDGTPGAVLCGIPFIRPRDVLQSQAGQSAQDKQQSLQQAIQQHYQRLYQLAEAKRDELG
GQLPIIATGHLTTVGASASESVREIYVGALEAFPTNAFPPAAYIALGHIHRPQKVGGLEH
IRYCGSPIPLSFDEARQGKEVLLVELDGTGLRAVTALPVPRFQPLLSVRGSLVELAAQIA
EAAQQGSAELPVWLEVLVSSDDYLSDLQARLAKLSEGLPLEVLRIRRERGAAQASLSGQA
KETLDELSPDEVFVQRLSSEELDPELQSDLRGLYRQVVSALREDQA
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgctgcatacctccgactggcacctcggccagcacttcatgggcaagacccgc
caggccgagcaccaggccttcctcgcctggctgctcgcccaggtccgtgagcagcaagtg
gatgccgtgctggtcgccggcgatatcttcgataccggtgcgccgcccagttatgcccgc
gagctgtacaaccatttcgtcgttgaactgcacgccatcggcgccgaactggtggtgctg
ggcggcaaccatgactcggtggccatgctcggtgagagcaagaccctgctggcgcagctc
aacacccgggtgatccccggcgtctgcgccgagctggtcgagcagctgctggtcctgcat
cgccgtgacggtacgccgggcgcggtgctctgcggcattcccttcatccgcccgcgtgac
gtactgcagagccaggccgggcagagcgcgcaggacaagcagcagtccctgcagcaggcg
atccagcagcactaccagcgcctctatcaactggccgaggccaagcgcgacgagctcggc
ggccagttgccgatcatcgccacgggccatctgaccaccgtcggcgccagcgccagcgag
tcggtgcgcgagatctatgtcggcgcgctggaagccttccccaccaatgccttcccgccg
gcggcctatatcgcccttggccatatccaccggccgcagaaggtcggcggcctggagcac
atccgctactgcggttcgccgattccgctgagtttcgacgaagccaggcagggcaaggag
gtgctgctggtcgagctggacggtaccggcctgcgcgcggtgacggcgctgccggtgccg
cgcttccagcccttgttgtccgtgcgcggctcgttggtcgaactggcggcgcagatcgcc
gaggcggcccagcagggcagtgccgagctgccggtctggctggaagtgctggtcagcagc
gacgactacctcagcgatctgcaggcgcggctggccaagctgagcgagggcctgccgctg
gaagtgctgcgcatccgccgggagcgcggtgcggcccaggccagcctgagcggccaggcc
aaggagacgctcgacgagctgagcccggacgaggtgtttgtccagcggctgagcagcgag
gagttggacccagagttgcagagcgatctgcgcggtctctatcgccaggtggtcagcgcc
ctgcgggaggatcaggcatga
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