Pseudomonas cavernae: D3880_06710
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Entry
D3880_06710 CDS
T08208
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcav
Pseudomonas cavernae
Pathway
pcav03030
DNA replication
pcav03430
Mismatch repair
pcav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D3880_06710
03430 Mismatch repair
D3880_06710
03440 Homologous recombination
D3880_06710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcav03032
]
D3880_06710
03400 DNA repair and recombination proteins [BR:
pcav03400
]
D3880_06710
Enzymes [BR:
pcav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D3880_06710
DNA replication proteins [BR:
pcav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
D3880_06710
DNA repair and recombination proteins [BR:
pcav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
D3880_06710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AYC32091
UniProt:
A0A385Z0A4
LinkDB
All DBs
Position
1457315..1460836
Genome browser
AA seq
1173 aa
AA seq
DB search
MAVSFVHLRLHTEYSLVDGLVRVKPLIKATAAAGMPAVAVTDQSNMCSLVKFYKAAQGAG
VKPICGADIWMASEEEDGPLSRLTLLVMNAKGYRNLTELVSRGWSDGQRNDQIIIERAWV
KEAAEGLIALSGAKEGEIGHALLSGDQVLAERLLGEWQSVFPERFYLEVQRTSRVNDEEH
LHAAVALAERCGAPLVATNDVRFIKQGDFEAHETRVCIGEGRTLDDPRRPRNYSDQQYLK
SPEEMWELFGDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHVSFEGL
EERLAVLWPKDTTPNYEEKRQIYIDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEME
EPLRDFLKVDEEAAEIWEMSLKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKKGLSDLNIDFIPLDDKPTYQ
MLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYDGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCANNGIDGDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PSPFMAAVLSADMHNTEKVVTLIEECRSMKLRILAPDVNNSEFKFTVDDDGRIVYGLGAI
KGVGEGPVEAIVECRAGGPFKDLFDFCARVDLKRINKRTLEALIRGGALDRLGPYFFDEV
KAYQANIDRNRAVLLAAMEEAVQAAEQTARSHDSGHMDLFGGLFSEPEADVYANHRNARE
LSLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARETQTIAGLIVNLRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFASNQALLQNDALVVVEGEVSNDDFSGGLRLR
AKRVMSLEEARTGLAESLRLRVQGEALKGDRLRWLGELCSRHRGACPLTLDYTGREAKAV
LQFGDSWRIDPADTLIQALRDQFGRDNVFLHYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggccgtttccttcgttcatttgcgtctgcacaccgaatactccctggtcgacgggttg
gtgcgggtcaaacccttgatcaaggcgacggcggcggcgggcatgccggcggtggcggtg
accgaccagagcaacatgtgctcgctggtgaagttctacaaagcggctcagggtgccggg
gtcaagccgatctgtggcgccgatatctggatggccagcgaggaggaggacggcccgctg
agccgcctgacgctgctggtgatgaatgccaagggctaccgcaacctcaccgaactggtg
tcccgtggctggagcgacggccagcgcaacgatcagatcatcatcgagcgggcctgggtg
aaggaggccgcagagggtctgatcgccctgtccggtgccaaggaaggggagatcggtcat
gccttgctgagcggcgatcaggtcctggccgaacgcttgctcggtgaatggcaatcggtg
tttcccgagcgtttctacctggaggtgcagcgcaccagtcgggtcaacgacgaggagcat
ctacacgccgccgtagccctggccgagcgctgcggcgcgccgctggtggcgaccaacgat
gtgcgcttcatcaagcagggcgacttcgaggcccacgaaacccgcgtgtgcatcggcgag
gggcgcaccctcgacgacccgcgccgcccgcgcaattactccgaccagcagtacctgaag
tcccccgaggaaatgtgggagctgttcggcgacctgcccgaggcgctggaaaacaccgtc
gagatcgccaagcgctgcaacatcgaggtgcagctgggcaaatacttcctcccggacttc
ccgacgccgaacggcatgggcatcgacgactacctgcgccatgtctccttcgaaggcctg
gaggaacgtctagcggtgctctggccgaaggacaccacgcccaactacgaagagaagcgg
cagatctacatcgatcgcctcaacttcgagctggacatcatcatccagatgggtttcccc
ggttacttccttatcgtgatggacttcatcaagtgggcgaaaaacaacggcgtgccggtc
ggccccggccgcggctcgggtgccggttcgctggtcgcctacgtgctgaagatcaccgac
ctcgacccgctggcctacgacctgctgttcgaacgctttctcaaccccgagcggatctcc
atgcccgacttcgacgtcgacttctgcatggacggtcgcgaccgggtcatcgactacgtg
gccgaggcctacgggcgcaacgcggtgagtcagatcatcaccttcggcaccatggcggcc
aaggcggtggtgcgcgacgtggcgcgcgtgcagggtaagtcctacggcctggccgatcgc
ctgtcgaagatgatccccttcgaagtcggcatgaccctggaaaaggcctacgagatggag
gaaccgctgcgcgacttcctcaaggtcgacgaggaagcggcggaaatctgggaaatgtcg
ctcaagctcgagggcatcacccgcggcaccggcaagcacgccggcggtgtggtgatcgca
ccgaccaagctcaccgacttctcgccgatcgcctgcgatgaagagggcggcggtctggtc
acccagttcgacaaggacgacgtcgaggccgccggcctggtcaagttcgacttcctcggc
ctgcgcaccctgaccatcatcaagtgggcgatggaaaccatcaaccgcgaacaggccaag
aagggcctgtccgatctgaacatcgacttcatcccgctggacgacaagccgacttaccag
atgctgcagagggccgaaaccacggccgtgttccagctcgaatcgcgcggcatgaaggag
ctgatcaagaagctcaagccggactgcctggaagacctcatcgctctggtggcgctgttc
cgccccggcccgctgcagtcgggcatggtcgacgacttcatcaaccgcaagcacggccgc
gccgagctggcctatccgcatcccgactaccagtacgacggcctcaaaccggtgctggcg
ccaacctacggcatcatcctgtatcaggagcaggtgatgcagattgcccaggtgatggcc
ggctataccctcggcggcgccgacatgctgcgccgcgccatgggcaagaaaaagcccgag
gagatggccaaacagcgcggcggtttcatcgagggttgcgccaacaacggcatcgatggc
gatctggcgggcaacatcttcgacctggtggaaaagttcgccggctacggtttcaacaag
tcgcactcggccgcctacggcctggtttcctaccagaccgcctggctgaagacccactat
ccgtcgccgttcatggccgccgtgctgtcggcggatatgcacaacaccgagaaggtcgtg
accctgatcgaggagtgtcgcagcatgaagctgcgcatcctcgccccggacgtgaacaac
tccgaattcaagttcaccgtcgacgacgacggccgcatcgtctacggcctcggcgcgatc
aagggcgtcggcgaaggcccggtggaggccatagtcgaatgccgcgccggcggaccgttc
aaggacctgttcgacttctgcgcgcgggtcgacctcaagcgcatcaacaagcgcacgctg
gaggcgctgattcgcggcggcgcgctggatcgcctggggccgtatttcttcgatgaggtc
aaggcctaccaggccaacatcgaccgcaaccgcgcggtgctgctggcggccatggaagag
gcggtgcaggcggccgagcaaaccgcccgcagtcatgacagcggccacatggacctgttc
ggcggcctgttctccgagcccgaggccgatgtctacgccaaccaccgcaatgcccgcgag
ctgtcgctcaaggagcgcctgaagggcgagaaggacaccctcggcctgtatctcaccggc
cacccgatcgacgaatacgaaggcgaggtgcgacgctttgcccggcagcgcatcgtcgag
ctgaagccggcgcgagagacccagaccatcgccgggctgatcgtcaacctgcgggtgatg
aagaacaagaagggcgacaagatgggctttatcaccttggatgatcggtctgggcggatc
gaggcgtcgctgttcgccgacgccttcgccagcaaccaggcgctgctgcagaacgacgcc
ctggtggtggtcgagggcgaggtcagcaacgacgatttttccggtggcctgcgcttgcgt
gccaagcgcgtgatgagcctggaagaggcgcgcaccggcctggccgaaagtctgcgtctg
cgggttcagggcgaggcgctgaaaggcgaccggctgcgctggctcggcgagctgtgcagc
cgccatcgtggcgcctgcccgctgaccctcgactacaccggcagagaagccaaggccgtg
ctgcagttcggcgacagctggcggattgacccggcggacacattgattcaggcattgcgt
gaccagttcgggcgcgacaacgtctttctgcactaccgctga
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