Pseudomonas cavernae: D3880_07035
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Entry
D3880_07035 CDS
T08208
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pcav
Pseudomonas cavernae
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcav03009
]
D3880_07035 (rlmD)
Enzymes [BR:
pcav01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D3880_07035 (rlmD)
Ribosome biogenesis [BR:
pcav03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D3880_07035 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
Methyltransf_11
PCMT
Cons_hypoth95
Methyltransf_23
RrnaAD
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Methyltransf_15
PDGF
DREV
Motif
Other DBs
NCBI-ProteinID:
AYC32149
UniProt:
A0A385YZ10
LinkDB
All DBs
Position
1521553..1522902
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AA seq
449 aa
AA seq
DB search
MAKRSGLRFQPSGGSRAAALPVGKKQKLTIERLANDGRGLGFVDGRTWFVTGALAGEEVE
ARVLGARSQVVEARAERILVASSERRVEPCVYAKRCGGCSLQHMAHADQLALKQRALAEQ
LHRLAGLEPEEWAAPLIGPEFAYRRRARIAVRWDVKSKRLDVGFRAAASQDIVAIDDCLV
LVPSLQPILRGLPQVLRGLSRPQALGHVELFSGTASVVLLRHTAPLADSDLAQLQAFCVA
HEAQLWLQGTSEPQPYLGGQTLGYRLERWNLQLDYRPGDFIQVNAPVNEAMVAQALDWLA
PQADERVLDLFCGLGNFALPLAQRVREVVAVEGVAAMVARAAGNAAANGLGNLHFFQADL
SNPLAEAPWAGQGFSAVLLDPPRDGAWEVVRQIGALGAKRVLYVSCNPATLARDAAELAK
QGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgtagcgggctgcgtttccagccgagtggcggcagccgcgcggcggcgctg
ccggtcggcaagaagcagaaactgacgatcgagcgcctggccaacgatggccgcggcctc
ggcttcgtcgacggccgcacctggttcgtcaccggcgcactggctggcgaggaagtcgag
gcccgcgtgctcggcgcccgcagccaggtggtggaggcgcgcgccgaacgcatcctcgtc
gccagcagtgagcgccgggtcgagccctgtgtctatgccaagcgctgcggcggctgctcg
ctgcaacatatggcgcatgccgatcagctcgcgctgaagcagcgcgcgctcgccgagcag
ttgcaccgcctggccgggctcgagcccgaggagtgggcggcgccgctgatcggcccggag
ttcgcctaccgtcgccgcgcgcgcatcgccgtgcgctgggatgtgaagagcaagcgcctc
gacgtcggcttccgtgccgcggccagccaggacatcgtcgccatcgacgactgcctggtg
ctggtgccgtccttgcagccgatcctgcgcggcttgccgcaagtgttgcggggcttgagc
cggccccaagcgctcgggcatgtcgaattgttcagcggcaccgccagcgtggtgctgctg
cgccacaccgcgccgctggcggacagcgacctggcgcagctgcaggcgttctgcgtggcg
cacgaggcgcagctgtggctgcagggcacgagcgagccgcagccgtatctgggcggacaa
acgctgggctatcggctggaacgctggaatttgcagctggactatcggcctggggatttc
atccaggtcaatgcgccggtgaacgaggcaatggtcgcgcaggcgctagactggttagca
ccgcaggccgatgagcgggtgctcgatctgttctgcggcctgggcaacttcgccctgccg
ctggcccagcgggtgcgcgaagtggtggcggtggaaggtgtcgccgcgatggtcgcccgc
gccgccggcaacgcggcggcgaatggtctgggcaacctgcactttttccaggccgacttg
tcgaatccgcttgccgaagcgccttgggctggacaaggattctcggcagtactgctggac
ccgccgcgcgatggcgcctgggaagtggtgcggcagatcggcgccctgggtgccaagcgg
gtgctgtacgtgtcctgcaacccggccacgctggcgcgcgatgccgccgaactggcgaag
cagggctaccggctaaagcgtgccggaatcctcgatatgttcccccagacggcgcatgtc
gaggcgatggcgttattcgaggcgggctag
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