Pseudomonas cavernae: D3880_07565
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Entry
D3880_07565 CDS
T08208
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
pcav
Pseudomonas cavernae
Pathway
pcav00541
Biosynthesis of various nucleotide sugars
pcav01100
Metabolic pathways
pcav01250
Biosynthesis of nucleotide sugars
Module
pcav_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
D3880_07565 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pcav01005
]
D3880_07565 (rfaD)
Enzymes [BR:
pcav01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
D3880_07565 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
pcav01005
]
Core region
D3880_07565 (rfaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
DapB_N
KR
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
AYC32244
UniProt:
A0A385Z0H6
LinkDB
All DBs
Position
1624483..1625487
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AA seq
334 aa
AA seq
DB search
MSIIVTGAAGFIGSNLVKALNERGETEIIAVDDLTEGDRFRNLVDCEISDYLDKRDFLAR
FARGDCGVVRAVFHQGACSSTLEGDGRFMMDNNYRYSCELLDACQALSVPFLYASSAAVY
GGGQVFRESREFERPLNVYGYSKFLFDQRVRRLLPQTRSQIVGLRYFNVYGPRETHKGRM
ASVAFHCFKQFRENGKVRLFGDYDGIAGGEHRRDFVSVEDVAKVNLHFFERPHSSGIFNL
GSGVAQPFNDVAVSMVNSLRAQDDLPPISREAMVEQGVLEYSEFPDALRGKYQSFTQAGL
ELLREAGYHQPFLRVEQGVERYCRWLLAQPQAVV
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcatcgttaccggtgccgccggctttatcggcagcaacctcgtcaaggcgctg
aacgagcgtggcgaaaccgagatcatcgcggtggacgatctcaccgaaggcgacaggttt
cgcaacctggtcgactgcgagatcagcgactacctggacaagcgcgacttccttgcccgc
ttcgcccgcggcgactgcggcgtggtgcgcgcggtgttccatcagggcgcctgctccagc
accctggaaggcgacggccgcttcatgatggacaacaactaccgctacagttgcgagctg
ctcgacgcctgccaggcgctcagcgtgccgttcctctacgcctcgtcggcggcggtgtat
ggcggcggccaggtgttccgcgaaagccgcgagttcgagcggccgctgaacgtctatggc
tactccaagttcctcttcgaccagcgcgtgcgccgcctgctgccgcagacccgcagccag
atcgtcgggctgcgctacttcaacgtctacggcccgcgcgagacgcacaaggggcgcatg
gcctcggtggcgttccattgcttcaagcagttccgcgagaacggcaaggtcaggctgttc
ggcgattacgacggcatcgccggcggcgagcatcggcgcgatttcgtctcggtggaggat
gtcgccaaggtcaatctgcacttcttcgagcggccgcacagttcagggatcttcaacctc
ggctccggcgtggcgcagccgttcaacgacgtggcggtgagcatggtcaacagcctgcgc
gcccaggacgatctgccgccgatcagccgcgaggcgatggtcgagcagggtgtgctcgag
tacagcgaattccccgacgccctgcgcggcaagtaccagagcttcacccaggccggcctc
gaactgctgcgcgaggccggctatcaccagccgttcctgcgcgtggagcagggtgtcgag
cgctattgccgctggttgctggcgcagccgcaagccgtggtttga
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