Pseudomonas cavernae: D3880_09080
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Entry
D3880_09080 CDS
T08208
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
pcav
Pseudomonas cavernae
Pathway
pcav02020
Two-component system
pcav02025
Biofilm formation - Pseudomonas aeruginosa
pcav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
D3880_09080
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
D3880_09080
09142 Cell motility
02040 Flagellar assembly
D3880_09080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcav03000
]
D3880_09080
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pcav02035
]
D3880_09080
Transcription factors [BR:
pcav03000
]
Prokaryotic type
Helix-turn-helix
Other families
D3880_09080
Bacterial motility proteins [BR:
pcav02035
]
Flagellar system
Flagellar assembly proteins
Others
D3880_09080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
AAA
AAA_22
AAA_7
nSTAND3
AAA_19
bpMoxR
AAA_2
Motif
Other DBs
NCBI-ProteinID:
AYC32522
UniProt:
A0A385Z4U4
LinkDB
All DBs
Position
1964098..1965570
Genome browser
AA seq
490 aa
AA seq
DB search
MWRETKILLIDDNSERRRDLAVILNFLGEEHIACASGTWRGAVEPLSSTRDVLCVLLGDV
ESKGGALELLKQLTGWDELVPLLLIGEPVPADWSEDLRRRVLASLEMPPSYNKLLDSLHR
AQVYREIYDQARDRGRQREPNLFRSLVGTSRAIQQVRQMMQQVADTEASVLILGESGTGK
EVVARNLHYHSRRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSADVRIIAATHKNLEQMIEAATFR
EDLYYRLNVFPIEMAPLRERVEDIPLLLNELISRMEVEKRGSIRFNSAAIMSLCRHDWAG
NVRELANLVERMAIMHPYGVIGVSELPKKFRHVDEEDEQLANTLRDELEERAAIVSGLPG
MSVSTLLPVEGLDLKDYLGNLEQGLIQQALDDASGVVARAAERLRIRRTTLVEKMRKYGM
NRRDEEVEQD
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgtgaaaccaaaattctgctgatcgatgacaacagtgagcgccgccgggatttg
gcggtcatcctgaatttccttggggaagaacacattgcttgtgctagcggaacttggcgg
ggggctgtcgagccgctgtccagcacccgcgatgtcctctgtgtgttgctgggcgatgtc
gagagcaagggtggggcgctggagctgctcaagcagttgaccggctgggatgagctggtg
cccttgttgttgatcggtgagccggtgcccgccgattggtcggaagatctgcgccgccgc
gtgctggccagtctggaaatgccgcccagctacaacaaactgctcgattcgctgcatcgc
gcccaggtctatcgggaaatctacgatcaggcccgtgatcgcggccgccagcgcgagccc
aatctgttccgcagcctggtgggcaccagtcgtgccatccagcaagtgcggcagatgatg
cagcaggtcgccgataccgaagccagcgtgctgattctcggggagtcgggcactggcaag
gaagtggtggcgcgcaacctgcactatcactccaggcgccgcgaggcgccgttcgtgccg
gtcaactgtggcgccattccggccgagttgctggagagcgagctgttcggccatgagaag
ggtgccttcaccggggccatcaccagccgcgcggggcgtttcgagctggccaacggcggt
acgctgttcctcgacgagatcggcgacatgccgctaccgatgcaggtcaagctgctgcga
gtcctgcaggagcgcaccttcgagcgcgtcggcagcaacaagacgcaatctgccgatgta
cgcatcatcgccgccacccacaagaacctcgagcagatgatcgaggcggccaccttccgc
gaggacctgtattaccgcctcaatgtgttccccatcgagatggcgccgctgcgcgagcgg
gtggaggacattccgctgttgctcaatgagctgatctcgcgcatggaagtggagaagcgt
ggctcgatccgcttcaactccgcggcaatcatgtcgctctgccggcatgattgggcgggc
aacgtccgcgagctggccaacctggtggagcgcatggcgatcatgcacccctacggggtg
atcggcgtgagcgagctgccgaagaagttccgccatgtcgacgaagaagatgagcaactc
gccaacaccctgcgcgatgagttggaggagcgcgcggcgatcgtctccggtctgcctggg
atgagtgtgtcgacgttgttgccggtggaagggctcgacctcaaggactacctcggcaac
ctcgagcaaggcttgatccagcaggcgctggatgacgccagtggcgtggtggcgcgcgcc
gccgagcgtttgcggatccgccgcaccaccctggtggagaagatgcgcaagtacggcatg
aatcgccgcgacgaggaagtcgagcaggattga
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