Pseudomonas cavernae: D3880_10900
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Entry
D3880_10900 CDS
T08208
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
pcav
Pseudomonas cavernae
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pcav01011
]
D3880_10900
Enzymes [BR:
pcav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
D3880_10900
Peptidoglycan biosynthesis and degradation proteins [BR:
pcav01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
D3880_10900
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LPAM_MltD
LysM3_LYK4_5
LysM2_CERK1_LYK3_4_5
NMB0315_dom_I
LysM_OapA
P_T4SS_TraN
Motif
Other DBs
NCBI-ProteinID:
AYC32848
UniProt:
A0A385Z582
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All DBs
Position
complement(2370126..2371688)
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AA seq
520 aa
AA seq
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MSSSSSKKLDLDVLARVSRALLTALALGLAGCQSMTAPPDNSGQDTDRAVDFARQTEWLE
QTTEPEPPQDIWARIRTGFKLQGEIGTNPRIERQRLWFASKPSYLESVSGRGSLYIHYVV
ERLEERNMPLELALLPVIESSYNPLAYSRSNAAGLWQFIPATGRHYNLQQTSWYDGRRDI
TASTNAAMNYLSRLHEMFNGDWLLALAAYNAGEGTVSRAIERNQKLGLPTDYWNLPLPQE
TQEYVPKLLALSQLVVAPEAYGINLEPIANEPYFEAIAINQRMDLSRVATLANIDEEELY
LLNPAFKKRITYGGPKQLLVPAEKAELLAANLSMMKPQELVDWQEYKVRNGDSLHGIANR
FHLTVSTLKDINRLSGNHLRVGQVLSIPARPGTQPQQPLFQNAAVRETQPSRSYRVKPGD
NLWQIAKANKVTVNDLKRWNKLSKQGLTAGQVLKLQGGKAVAASKGKSREAVTYYKVKKG
DSMYLIAKRFNVETRHLENWNPNTGRALRPGQTLTLYLTN
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcatcttcttctaaaaaacttgatctagatgtgttggcaagggtctcccgagcg
ctgctgaccgcgctcgccctcggtttggccggctgtcagagcatgaccgccccgcccgac
aacagtggccaggacaccgatcgcgccgtcgactttgcacggcaaacagaatggttggag
cagacgactgagcccgagccgccgcaggatatctgggcgcgcatacgcaccggcttcaag
ctccagggcgagatcggcaccaatccgcgcatcgagcgccagcgcctgtggttcgccagc
aagccctcctacctggaaagcgtcagcggccgcggcagcctgtatatccattacgtcgtc
gagcgtctggaagagcgcaacatgcccctggagctggcgctgctgccggtcatcgaaagc
tcctacaatcccctcgcctattcgcgcagcaatgccgctggcctctggcagttcatcccg
gccaccggacgccactacaacctgcagcagaccagttggtacgacggccgccgcgatatc
accgcctcgaccaatgcggcgatgaactacctgtcgcgcctgcacgagatgttcaacggc
gactggctgcttgccctggccgcctacaacgccggcgaaggcacggtcagccgcgccatc
gagcgcaaccagaaactcggcctgccgaccgattactggaacctgccactgccgcaggaa
acccaggaatacgtaccgaaactcctggccctgtcgcaactggtagtggcgcccgaggcc
tacggcatcaacctggagccgatcgccaacgagccctatttcgaggcgatcgccatcaac
cagcgcatggacctgtcgcgcgtcgccaccctcgccaatatcgacgaggaagagctttac
ctgctcaacccggcattcaagaaacgcatcacctacggcggtcccaagcagttgctggtg
ccggcggaaaaggccgagctgttggccgccaacctgtcgatgatgaaaccgcaggaactg
gtggactggcaggaatacaaggtgcgcaatggcgatagcctgcacggcatcgccaaccgc
tttcacctgacggtcagcaccctgaaagacatcaatcgcctttccggcaaccatctgcgt
gtcggccaggtgctgagcattcctgcccgccctggaacacaaccgcagcagccgctgttc
cagaatgcggccgtgcgggaaactcagccgtcacgcagctaccgggtcaagccaggcgac
aacctgtggcagatcgccaaggccaacaaggtcacggtcaacgacctcaagcgctggaac
aagctctccaagcagggtctgacagccggccaggtgctcaaactgcaaggcggcaaggcg
gttgccgccagcaaaggcaagtcgcgggaggccgtcacctactacaaggtgaagaagggc
gattccatgtacctgatcgccaagcgcttcaatgtcgagacccggcatctcgaaaactgg
aaccccaataccgggcgggcgctgcgcccggggcaaaccctcaccctctacctgaccaac
tga
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