Pseudomonas cavernae: D3880_14080
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Entry
D3880_14080 CDS
T08208
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcav
Pseudomonas cavernae
Pathway
pcav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3880_14080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcav03019
]
D3880_14080
03009 Ribosome biogenesis [BR:
pcav03009
]
D3880_14080
Enzymes [BR:
pcav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D3880_14080
Messenger RNA biogenesis [BR:
pcav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D3880_14080
Ribosome biogenesis [BR:
pcav03009
]
Prokaryotic type
rRNA processing factors
D3880_14080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AYC33413
UniProt:
A0A385Z609
LinkDB
All DBs
Position
3090404..3093358
Genome browser
AA seq
984 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GSERHGFLPLKEISREYFKKSPEGRINIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWSAIKEASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALS
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRSRARIVILPNDHLETPHF
EVQRLRDDSPEAISGQSSYEMTAAEVEEAQPASATRTLVRQEAAIKAAPRTTPVQAAPVA
EEVAQPATQPSLFKGLVKSLVSLFAGKEEQPPVVAEKQPAAERQPRSDERRSGRQQTRSR
SGRRDEERKPREERQPREERQPREARERDDSQAREPQENRRERPPREERKPREERKPREE
RVRELREPLDGQGQAQALAEERAERKPREERQPRPPREERQPRAAEQAGTEAEELPNEEL
LNDEEQDAGEGGDRPRRRSRGQRRRSNRRERQRDANGNLIEGSEEAGEVEVEAEGETVAA
AALASGAVLASQLPSEASSEQPAQAEETSSPAVEAVAVESETSMVAAPEAPAIEVSAPVV
VDTSAVESPVEAAPSESTPAVIAAEPVEPLASPVEQAPEPASEPVAVAVVSEAPPAPAVT
ASGRAANDPREVRRRQREAERLAKETEEQAAAASEPEPVAQPAEAGSDSPAEQVAVSDEE
SREGAAPAEADERNEATDESKPLV
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcattaacgcaactcagcccgaagagttgcgtgttgccctggtagac
ggccaacgcctctacgatctggacatcgaatcgggcgcccgcgagcagaaaaaggccaac
atctacaaaggccgcatcactcgcgtcgaacccagcctcgaagccgccttcgtcgacttt
ggttccgaacgccacggcttcctccccctcaaagaaatttctcgcgaatacttcaagaag
agccctgaaggccgcatcaatatcaaagacgtgttgagcgaaggccaggaagtcatcgtt
caggttgagaaagaagagcgcggcaacaagggtgcggcgctgaccacctttatcagcctg
gccggccgttacctcgtgctgatgccgaacaacccgcgcgccggcggcatttcccgccgc
atcgaaggcgaagaacgcaacgaactgcgcgaagcgctgaacggcctggtcgccccggcc
gacatgggcctgatcgtgcgtaccgccggtcttggccgctccagcgaagaaatgcagtgg
gacctcgattacctgctgcagctgtggagcgccatcaaagaagcctcgcaggatcgcgcc
gcgcccttcctgatctatcaggaaagcaacgtgatcatccgcgccatccgcgactatctg
cgccaggacattggcgaagtactggtcgacagcgtcgaagcccaggaagaggccctcagc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtatgaagacagcgtg
ccgctgttcaatcgcttccagatcgaaagccagatcgagaccgccttccagcgcgaagtg
aaactgccgtccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcagcgcgcgcgaccaaaggcagcgacatcgaagaaaccgctctgcagaccaac
ctggaagcggcagaagaaatcgcccgccagctgcgcctgcgcgacatcggcggtctaatc
gtcatcgacttcatcgacatgacgccggcgaaaaaccagcgcgccgtggaagagaaagtc
cgcgaagccctggaagccgatcgtgcccgcgtgcaagtcgggcgcatctcgcgcttcggc
ctgctggaaatgtcccgccagcgcctgcgtccgtccctcggcgagaccagcggcatcgtc
tgcccgcgctgcaacggccaaggcatcatccgtgacgtcgaatcgctgtcgctggcaatc
ctgcgcctgatcgaagaagaggcgctgaaagatcgtaccgccgaagttcgcgcccaggta
ccgatcccggtggcggccttcctgctcaacgagaagcgcaactcgatcaccaagatcgaa
ctgcgcagccgtgcgcgcatcgtcatcctaccgaacgatcacctggaaaccccgcacttt
gaagtccagcgtctgcgcgacgacagcccggaagccatcagtggccaatccagctacgaa
atgacggccgccgaagtcgaagaagcccaaccggctagcgccacccgcaccctggtccgc
caggaagcggcgatcaaggccgcgccgcgcaccaccccggtacaagccgctccggtcgct
gaagaagtcgcccaaccggctacccagcccagcctgttcaaaggcctggtcaagtcgctg
gtcagcctgttcgccggcaaggaagaacagccgccagtagtcgccgagaagcagccggcc
gccgagcgccagccgcgtagtgatgagcgccgcagcggtcgccagcagacccgcagccgc
agtggtcgtcgcgacgaagaacgcaagccacgcgaagaacgccagccgcgtgaagagcgc
caaccgcgcgaagcccgtgagcgtgatgacagccaggctcgcgagccgcaggaaaatcgc
cgcgagcggccgccacgcgaagagcgtaagccgcgtgaggagcgcaagccgcgcgaagag
cgcgtgcgcgaattgcgtgagccgctggacggccaaggccaagcccaagcacttgccgag
gagcgcgccgagcgcaaacctcgcgaggagcgccagccccgcccgccgcgcgaagagcgt
caaccacgtgccgccgaacaggccggcaccgaggccgaggaactgccgaacgaagagctg
ctaaacgacgaggagcaggatgccggcgaaggcggtgatcgtccgcgccgccgctcccgt
ggtcagcgccgtcgcagcaatcgccgcgagcgccaacgcgatgccaacggcaacctgatt
gaaggcagcgaagaagccggtgaagtcgaagtcgaagctgaaggcgaaaccgtagctgca
gccgcactggctagcggtgccgtgctggccagccaactgcctagtgaagcgagcagcgag
caaccggcacaggcggaagaaaccagcagccccgcagtcgaagctgtagcagtggaaagc
gaaacctcgatggtggcagcccctgaagcaccggcgatcgaggtcagtgctccagtcgtg
gtggacacatctgcggtagaaagcccggtcgaagccgcaccgtctgagagcactccagca
gtgatcgcagcagagccggtagaaccgctggcaagcccggtagagcaagcccccgagccg
gccagcgagcccgtagctgtagctgtcgtcagcgaagcgccgccagcacccgccgtaact
gccagcgggcgtgccgccaacgacccgcgtgaagtacgtcgccgtcagcgggaagccgag
cgcctggccaaggagaccgaggagcaggccgccgcagccagcgagcccgagccagtggcc
cagcctgccgaagcaggaagcgacagcccggctgagcaagtagccgttagcgatgaggaa
agccgcgaaggggccgcgccagccgaggccgacgagcgcaatgaagccacggacgagtcc
aaacctctagtttaa
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