Pseudomonas cavernae: D3880_15535
Help
Entry
D3880_15535 CDS
T08208
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pcav
Pseudomonas cavernae
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcav03016
]
D3880_15535 (rnd)
Enzymes [BR:
pcav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
D3880_15535 (rnd)
Transfer RNA biogenesis [BR:
pcav03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D3880_15535 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AYC33680
UniProt:
A0A385Z568
LinkDB
All DBs
Position
complement(3420491..3421630)
Genome browser
AA seq
379 aa
AA seq
DB search
MAIEINWIRDDASLARHCAEWQRLPYVVLDTEFVRVDTFYPLAGLVQVGDGSRAHLIDPL
LIGDWSSFAALLENPAVVKVLHATSEDLEVFQRLAGALPVPLFDTQIAAAYLNLGFSMGY
SRLVQELLGIELPKGETRSDWLQRPLSATQVSYAAEDVLHLAEVYQALQAKLPQDKNAWV
LEDGAELVANQLRVTAPEDAYRDAKLAWKLAPAQLAVLRELCAWREREARTRNQPRNRVL
RENSLWPLARYQPDNLVSLARIDDMHPKTVRQDGEFLLQLIKDAAATPPHSWPAPLPEPL
PLEASALLKKLRAIGQREAERLDMAPELMLRKKTLEALLKSGFPNGPYQLPESLRGWRRE
LMGQALLDTLAGQPPGEQA
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
gtggctatcgaaattaactggattcgcgacgacgccagcctggcgcggcactgcgccgag
tggcagcgcctgccttatgtggtgctggacaccgagttcgtgcgggtcgacaccttctat
ccgctggccggcctggtgcaggtcggcgatggcagccgggcgcatctgatcgatcccctg
ctgatcggcgattggagcagcttcgccgccctgctggagaacccggcggtggtcaaggtg
ctgcatgccaccagcgaggatctggaggtgttccagcgcctggccggcgcgctgccggta
cccttgttcgacacccagatcgccgccgcctacctcaatctgggcttctccatgggctat
tcgcggctggtgcaggagctgctgggcatcgaactgcccaagggcgagacccgctccgac
tggctgcagcgcccgctgtcggcgactcaggtcagctacgccgccgaggacgtgctgcat
ctggccgaggtgtaccaggccctgcaggccaagctgccgcaggacaagaacgcctgggta
ctggaggacggcgccgagctggtcgccaaccagctacgggtcaccgccccggaagacgcc
taccgcgacgccaagctggcctggaagctggccccggcgcagctcgccgtgttgcgtgag
ttgtgtgcctggcgtgagcgcgaggcgcggacgcgcaatcagccgcgtaaccgcgtgctg
cgggagaattcgctgtggccgctggcgcgttaccagccggacaacctggtcagcctggcg
cgcatcgacgacatgcatccgaagaccgtgcgccaggatggcgaattcctcctgcagctg
atcaaggacgccgctgccacgccgccgcacagttggcccgcgccgctgcccgagccgttg
ccgctggaagcctcggcgctgctgaagaaactgcgcgccatcggccagcgcgaggccgag
cgcctggacatggcgccggagctgatgctgcgcaagaaaaccctcgaagcgctgctgaaa
agcggctttcccaacggcccctatcagttgccggagtccctgcgtggctggcgccgcgag
ctgatgggccaggcattgctcgacacgctggccggccaaccgccgggagaacaggcatga
DBGET
integrated database retrieval system
