Pseudomonas cavernae: D3880_15915
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Entry
D3880_15915 CDS
T08208
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pcav
Pseudomonas cavernae
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcav03009
]
D3880_15915
Enzymes [BR:
pcav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D3880_15915
Ribosome biogenesis [BR:
pcav03009
]
Prokaryotic type
rRNA helicases
D3880_15915
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Abhydrolase_1
Motif
Other DBs
NCBI-ProteinID:
AYC33749
UniProt:
A0A385Z3A9
LinkDB
All DBs
Position
complement(3494082..3495431)
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AA seq
449 aa
AA seq
DB search
MFSQFALHERLLKAVAELNFAEPTPVQTAAIPPALEGRDLRVIAQTGSGKTAAFVLPMLN
RLMGDAKPRVNIRALILLPTRELAQQTLKQVELFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDVLIATPGRLLEHLNAGHLDFEQVEVLVLDEADRMLDMGFAEDVQRLAGECKRAHQTL
LFSATSGGAGLREMIGSVLKDPLHLKLNSVGELNEGTRQQIITADHAYHKEQLVEWLLNH
ETYQKAIIFTNTRVQADRLYGRLVAKEFKAFVLHGDKDQKDRKLAIERLKQGGTKVLVAT
DVAARGLDVEGLDLVINFDMPCSGDEYVHRIGRTGRAGGEGLAVSLIGHGDWNLMSSIER
YLKQNFERRTIKELKGTYQGPKKVKASGKAAGTKKKKVESKAGAKAPSKAPAKRKPARPK
SDQPALVSQDGMAPLKRRKPAAGAGSASE
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcatgaacgcctgctcaaagccgtcgccgagctgaacttc
gccgagccgacgccggtgcagacagcggccattcctcctgcgctggaggggcgtgacctg
cgggtgatcgcgcagaccggcagcggcaagaccgcggccttcgttttgcccatgctcaac
cgcctgatgggcgatgccaagccgcgggtcaatatccgtgcgttgatcctgctgccgacc
cgcgagctggcgcagcagacgctcaagcaggtcgaactgttctcgcagttcaccttcatc
aagtccgggctgatcaccggcggcgaggacttcaaggtgcaggccgccatgctgcgcaag
gtgccggacgtgctgatcgccacaccgggacgtctgctcgagcacctgaacgccggtcat
ctggatttcgagcaggtcgaggtgttggtgctcgacgaggccgaccgcatgctcgacatg
ggcttcgccgaggatgtccagcgcctggccggcgaatgcaaacgcgcgcaccagaccctg
ctgttctccgccaccagcggcggcgccgggctgcgcgagatgatcgggtccgtgctgaag
gacccgctgcacctgaagctcaacagcgtcggcgagctcaacgaggggacccgtcagcag
atcatcaccgccgaccacgcctaccataaagagcaactggtggagtggctgctgaatcac
gagacgtaccagaaggcgatcatcttcaccaacacccgggtccaggccgatcgcctgtac
ggccggctggtggccaaggaattcaaggccttcgtcctgcatggcgacaaggatcagaag
gaccgcaagctggccatcgagcgcctcaagcagggcggcaccaaggtgctggtcgccacc
gacgtcgccgcccgcggcctggatgtggaaggcctggatctggtgatcaacttcgacatg
ccgtgcagcggcgacgaatacgtgcatcgcatcggccgtaccggacgtgccggtggcgag
gggctggcggtgtcgctgattggccatggcgactggaacctgatgtcgagcatcgagcgc
tacctcaagcagaacttcgagcgccgcaccatcaaggaactcaaaggcacctatcagggg
ccgaagaaggtcaaggcctccggcaaggccgccggtaccaagaagaaaaaggtcgagagc
aaagccggcgccaaggccccgagcaaggctccagccaagcgcaaacctgctcgcccgaag
agcgaccagccggcgctggtcagtcaggacggcatggccccgctcaagcggcgcaaaccg
gcagctggcgccggctccgcctctgaataa
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