Pseudomonas cavernae: D3880_17850
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Entry
D3880_17850 CDS
T08208
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pcav
Pseudomonas cavernae
Pathway
pcav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
D3880_17850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcav03400
]
D3880_17850
Enzymes [BR:
pcav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
D3880_17850
DNA repair and recombination proteins [BR:
pcav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
D3880_17850
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D3880_17850
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D3880_17850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
DFF-C
Motif
Other DBs
NCBI-ProteinID:
AYC34109
UniProt:
A0A385Z487
LinkDB
All DBs
Position
complement(3933941..3935371)
Genome browser
AA seq
476 aa
AA seq
DB search
MSASIFWYDYETTGIDPRRDRPLQVAGIRTDEALNEIGEPLNLYCRPSDDILPHPAACLI
TGISPGRLAEQGLGEAEFMTHVHRELATPGTCGAGYNSLRFDDEVTRNSLYRNFFDPYAR
EWQGGNSRWDLIDVVRTAYALRPEGIHWPEEDGRVTLKLERLTAANGLEHGQAHDALSDV
RATIALARLVRERQPKLYDYLYQLRSKQRVLDQVRLLQPLVHISGRFSAARHYLAVVLPL
AWHPRNRNALIVCDLQANPAPLLEQDADSLRRLLYTRRDELAAGELPVPLKLLHINRCPV
VAPLNVLRDVDCQRLQLDLQECLARVERLRETQTLWQGKLQALYGEDEFTPSEDPEQQLY
DGFLGERDRRLCERVRRAEPQSLGREDWLFDDPRLAELLFRYRARNFPETLAATEQSRWR
EFCQNRLSAQEWGAPNTLASFEMALAAALENASSGQRQLLGEWREYAQQLRQSYGL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgccagcatcttctggtacgactacgaaaccactggcatcgacccgcgccgcgac
cggcccttgcaagtcgccggcatccgtaccgatgaggcgttgaatgagatcggcgagccg
ctcaatctgtattgccggccgagcgacgacatcctgccgcatccggccgcctgcctgatc
accggcatcagtcccgggcgtctggccgaacagggcctcggcgaggccgagttcatgacc
cacgtgcaccgcgagttggcgactccgggcacctgtggggcgggctacaacagtttgcgc
ttcgacgatgaagtgacgcgcaacagtctgtaccgcaacttcttcgacccctacgcccgc
gaatggcagggcggcaacagtcgctgggacctgatcgatgtggtgcgcaccgcctatgcc
ctgcgcccggaaggcatccactggcccgaggaggacggccgcgtcaccctcaagctggag
cgcctcaccgcggccaacggtctggaacatggtcaggctcacgacgccttgtcggacgtg
cgcgccaccatcgccctggcgcggttggtccgcgagcgccaacccaagttgtacgactac
ctctaccaactgcgcagcaaacagcgggtgctcgaccaggttcgcctgttgcaaccgctg
gtgcatatctccgggcggttttctgcggcgcggcattatctcgccgtggtcctgccgctg
gcctggcatccgcgcaatcgcaacgccctgatcgtctgcgatctgcaggccaacccggcg
ccgttgctggaacaggatgccgacagcctgcggcgtctgctctatacccgccgcgacgaa
ctggccgccggtgaactgccggtgccgctgaagttgctgcacatcaaccgttgtccggtg
gtggcgccgctgaatgtgctgcgtgacgtcgattgccagcgcctgcaattggatctgcag
gagtgcctggcacgcgtcgaacggctgcgcgagacgcagacgctgtggcagggcaagttg
caggccctgtatggcgaggatgagttcacccccagcgaggatcccgaacagcagttatat
gacggcttcctcggcgagcgtgatcgccgtctgtgcgaacgggtgcggcgtgccgaaccg
caaagccttggacgtgaagactggctgttcgatgacccacgcttagcggaattactgttt
cgttatcgggcgcgcaactttccggaaactttggcggcgaccgaacagtcacgctggcgg
gaattctgccaaaaccgactgagtgcacaggagtggggcgcacctaataccctcgcgagt
tttgagatggcgctggcagctgccctggaaaatgcctcgagcggccagcggcagctgctg
ggtgagtggcgtgaatatgcccagcaattacgtcagagctacggcttataa
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