Pseudomonas cavernae: D3880_18550 Help Entry D3880_18550       CDS       T08208                                  Name (GenBank) RNA polymerase factor sigma-54   KO K03092   RNA polymerase sigma-54 factor Organism pcav  Pseudomonas cavernae Pathway pcav02020   Two-component system pcav02040   Flagellar assembly Brite KEGG Orthology (KO) [BR:pcav00001]  09130 Environmental Information Processing   09132 Signal transduction    02020 Two-component system     D3880_18550  09140 Cellular Processes   09142 Cell motility    02040 Flagellar assembly     D3880_18550  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:pcav03021]     D3880_18550 Transcription machinery [BR:pcav03021]  Prokaryotic type   Bacterial type    RNA polymerase     Sigma factors      D3880_18550 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR Motif Other DBs NCBI-ProteinID:  AYC34241 UniProt:  A0A385Z6B5 LinkDB All DBs Position 4073855..4075363 Genome browser AA seq 502 aa AA seqDB search MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNAD PLADGADTPSAPAEQSESFAESSYQEVNSSVDNLEEGEWNERIPSELPVDTAWEDIYQTS ASSLPSNDDDEWDFTTRTSSGESLQTHLLWQLNLAPMSDKDRLIAVTLIDCINDQGYLEE SLQEVLEAFDPELDIELDEVEAVLHRIQQFEPAGIGARDLRECLLLQLRQLSAKTPWLSE AQRLAGDYLDLLGGRDYSQLMRRMRLKEDELRQVIELIQSLNPRPGSQIESSEAEYVVPD VIVRKHNDRWLVELNQEAMPRLRVNPQYASFVRRADASADNTFMRNQLQEARWFIKSLQS RNETLMKVATQIVEHQRGFLDYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRG IYELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVAR RTVAKYRESLGIAPSSERKRLM NT seq 1509 nt NT seq  +upstreamnt  +downstreamnt atgaaaccatcgctagtccttaagatgggccagcagctgacgatgacaccgcagctgcaa caagccatccgcctcctccagctgtcgaccctggatctgcaacaagagattcaggaagcc ctggaatcgaacccgatgctcgaacgccaggaagatggcgacgacttcgacaatgccgat ccactggccgatggcgccgacactccgagtgctcccgccgagcagagcgagtccttcgcg gaaagcagctaccaggaagtcaactcatcggtcgacaacttggaggaaggcgaatggaac gaacgcatccccagcgaactgcccgtcgacaccgcctgggaagacatctaccagaccagc gccagcagcctgcccagcaacgatgatgacgagtgggacttcaccacccgcacctcgtcc ggcgaaagcctgcaaacccacttattgtggcagctcaacctggcgccgatgtccgacaag gaccgcctgatcgccgtcaccctgatcgactgcatcaacgaccagggctatctggaggaa agcctgcaggaagtgctcgaagccttcgacccggagctggacatcgaactggacgaagtg gaagcggtgctgcatcgcatccagcaattcgagccggccggcatcggcgcgcgcgacctg cgcgaatgcctgctcctgcaactacgccagctgtcggccaagaccccctggctgagcgag gcccagcgcctggccggcgactacctcgacctgctcggcggccgcgactacagccagttg atgcgccgcatgcgcctcaaggaagacgagctgcgtcaggtcatcgagctgatccagagc ctcaacccgcgccccggctcgcagatcgagtcgagcgaggcggaatacgtggtgcccgac gtcattgtgcgcaaacataacgaccgctggctggtggagctgaaccaggaagccatgccg cgcctgcgggtcaacccgcaatacgccagtttcgtgcgccgcgccgatgccagcgccgac aacaccttcatgcgcaatcagctgcaggaagcacgctggttcatcaagagcctgcaaagt cgcaacgagacgctgatgaaggtcgccacccagatcgtcgaacatcagcgtggcttcctc gactatggcgacgaggcgatgaagccgctggtgctgcacgacatcgccgaagccgtgggc atgcacgaatcgaccatttcccgggtcaccacgcagaaattcatgcacacgccgcgtggc atttacgagttgaaatacttcttctccagccacgtcagcaccgccgaaggcggcgaatgc tcctccaccgcaatccgcgcgatcatcaaaaaactggtcgctgcggaaaatgcgaaaaag ccgttgagcgacagcaagatcgctggtttactggaagcacagggcattcaagtagcccgt cgcaccgtcgccaaataccgtgaatccctcggaatagcgccttccagcgaacgcaagcga ctgatgtga

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